MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-338-P1

Family name MIR-338 (all species)
Seed CCAGCAU
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-338b
Paralogues Cpi-Mir-338-P2  Cpi-Mir-338-P2-as 
Orthologues Ami-Mir-338-P1  Cli-Mir-338-P1  Cmi-Mir-338-P1  Dre-Mir-338-P1  Ebu-Mir-338-o1  Gmo-Mir-338-P1  Lch-Mir-338-P1  Loc-Mir-338-P1  Mal-Mir-338-P1  Mun-Mir-338-P1  Sto-Mir-338-P1  Tgu-Mir-338-P1  Tni-Mir-338-P1  Xla-Mir-338-P1a  Xla-Mir-338-P1b  Xtr-Mir-338-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)		 JH584772: 1374338-1374397 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGACUGUCUUUGCAAAUGUUUAUUUCUGGCAACACUAUCCUGAUGCUGUCAGAGUAUGUGGUAAAGCUCCAGCAUCAGUGAUUUUGUUGUUAGUGGUAAAUUCAAGCAGCUAGAAUUGUA
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Structure
        10          20        30         40        50         
AGACUGUCUUUGCAAAU--      UU         CU   -|        UC  AGUAUG 
                   GUUUAU  CUGGCAACA  AUC CUGAUGCUG  AG      U
                   UAAAUG  GAUUGUUGU  UAG GACUACGAC  UC      G
AUGUUAAGAUCGACGAACU      GU         UU   U^        C-  GAAAUG 
.       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Te Te Te To
Star sequence

Cpi-Mir-338-P1_5p*
mirBase accessionMIMAT0037866
Sequence 
0- AACACUAUCCUGAUGCUGUCAGA -23
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Mature sequence

Cpi-Mir-338-P1_3p
mirBase accessionMIMAT0037867
Sequence 
37- UCCAGCAUCAGUGAUUUUGUUGU -60
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