| MirGeneDB ID | Bge-Mir-275 |
|---|
| Family name |
MIR-275 (all species) |
|---|
| Seed |
CAGGUAC |
|---|
| Species |
Cockroach (Blattella germanica) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Aae-Mir-275
Aga-Mir-275
Csc-Mir-275
Dan-Mir-275
Dlo-Mir-275
Dma-Mir-275
Dme-Mir-275
Dmo-Mir-275
Dpu-Mir-275
Dsi-Mir-275
Dya-Mir-275
Gpa-Mir-275
Hme-Mir-275
Isc-Mir-275
Lpo-Mir-275-P3
Lpo-Mir-275-P4-v1
Lpo-Mir-275-P4-v2
Lpo-Mir-275-P5
Lpo-Mir-275-P6
Lpo-Mir-275-P7
Tca-Mir-275
|
|---|
| Node of Origin (locus) |
Arthropoda
|
|---|
| Node of Origin (family) |
Arthropoda
|
|---|
Genome context
(Bger_2.0) |
KZ616644.1: 183402-183466 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UCCACAAGGAUUUUUGUCCUGGUCACUCGCACGUGCUGCAUCAGGUGCUAGUGACUGUGAAUAAAUUGUCAGUCAGGUACCUGAAGUAGCGCGCGGAGAGACUCAGGCCUUGCAUCAUAUCUGGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UCCACAAGGAUUUUUGU- -| A GCA A AG GUGAAU
CCUG GUC CUC CGUGCUGC UCAGGUGCU UGACU A
GGAC CAG GAG GCGCGAUG AGUCCAUGG ACUGA A
UGGUCUAUACUACGUUCC U^ A GC- A -- CUGUUA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
| Ad |
Ad |
Co |
Co |
Di |
Di |
Eg |
Eg |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ov |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Bge-Mir-275_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- ACGUGCUGCAUCAGGUGCUAGUGACU -26
Get sequence
|
|---|
| Mature sequence |
Bge-Mir-275_3p |
| mirBase accession | None |
|---|
| Sequence |
42- UCAGGUACCUGAAGUAGCGCGCG -65
Get sequence
|
|---|
