MirGeneDB 3.0

MirGeneDB ID

Lpo-Mir-275-P6

Family name MIR-275 (all species)
Seed CAGGUAC
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-275-P3  Lpo-Mir-275-P4-v1  Lpo-Mir-275-P4-v2  Lpo-Mir-275-P5  Lpo-Mir-275-P7 
Orthologues Aae-Mir-275  Aga-Mir-275  Bge-Mir-275  Csc-Mir-275  Dan-Mir-275  Dlo-Mir-275  Dma-Mir-275  Dme-Mir-275  Dmo-Mir-275  Dpu-Mir-275  Dsi-Mir-275  Dya-Mir-275  Gpa-Mir-275  Hme-Mir-275  Isc-Mir-275  Tca-Mir-275 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Arthropoda
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)
NW_013665698.1: 806533-806595 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAGAAGCUACUAUCAUCCGGUGUGGUUCCCACGUGCUGCAUCAGGUGCUUGUGACUGUGUUGAAGAAAGUCAGGUACCUGAAGUAGCGCGCGGAGAACUCUGGGAUUUAGCGACGAGACAAAG
Get precursor sequence
Structure
        10            20         30        40        50        60 
AAGAAGCUACUAUCAUC----|  UGU     -  A        A           UGACUGUGU 
                     CGG   GGUUC CC CGUGCUGC UCAGGUGCUUG         \
                     GUC   UCAAG GG GCGCGAUG AGUCCAUGGAC         U
GAAACAGAGCAGCGAUUUAGG^  ---     A  C        A           UGAAAGAAG 
 120       110       100           90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ge Ge So So So To
Star sequence

Lpo-Mir-275-P6_5p*

mirBase accessionNone
Sequence
0- ACGUGCUGCAUCAGGUGCUUGUGA -24
Get sequence
Mature sequence

Lpo-Mir-275-P6_3p

mirBase accessionNone
Sequence
39- UCAGGUACCUGAAGUAGCGCGCGG -63
Get sequence