MirGeneDB ID | Lpo-Mir-275-P6 |
Family name |
MIR-275 (all species) |
Seed |
CAGGUAC |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Mir-275-P3
Lpo-Mir-275-P4-v1
Lpo-Mir-275-P4-v2
Lpo-Mir-275-P5
Lpo-Mir-275-P7
|
Orthologues |
Aae-Mir-275
Aga-Mir-275
Bge-Mir-275
Csc-Mir-275
Dan-Mir-275
Dlo-Mir-275
Dma-Mir-275
Dme-Mir-275
Dmo-Mir-275
Dpu-Mir-275
Dsi-Mir-275
Dya-Mir-275
Gpa-Mir-275
Hme-Mir-275
Isc-Mir-275
Tca-Mir-275
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Arthropoda
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013665698.1: 806533-806595 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAGAAGCUACUAUCAUCCGGUGUGGUUCCCACGUGCUGCAUCAGGUGCUUGUGACUGUGUUGAAGAAAGUCAGGUACCUGAAGUAGCGCGCGGAGAACUCUGGGAUUUAGCGACGAGACAAAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAGAAGCUACUAUCAUC----| UGU - A A UGACUGUGU
CGG GGUUC CC CGUGCUGC UCAGGUGCUUG \
GUC UCAAG GG GCGCGAUG AGUCCAUGGAC U
GAAACAGAGCAGCGAUUUAGG^ --- A C A UGAAAGAAG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Lpo-Mir-275-P6_5p* |
mirBase accession | None |
Sequence |
0- ACGUGCUGCAUCAGGUGCUUGUGA -24
Get sequence
|
Mature sequence |
Lpo-Mir-275-P6_3p |
mirBase accession | None |
Sequence |
39- UCAGGUACCUGAAGUAGCGCGCGG -63
Get sequence
|