MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-275-P7

Family name MIR-275 (all species)
Seed CAGGUAC
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-275-P3  Lpo-Mir-275-P4-v1  Lpo-Mir-275-P4-v2  Lpo-Mir-275-P5  Lpo-Mir-275-P6 
Orthologues Aae-Mir-275  Aga-Mir-275  Bge-Mir-275  Csc-Mir-275  Dan-Mir-275  Dlo-Mir-275  Dma-Mir-275  Dme-Mir-275  Dmo-Mir-275  Dpu-Mir-275  Dsi-Mir-275  Dya-Mir-275  Gpa-Mir-275  Hme-Mir-275  Isc-Mir-275  Tca-Mir-275 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Arthropoda
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013667762.1: 52507-52570 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GAGGGAGUACUAUCACUCGGUAUGGUUCUCACGUGCUGCAUCAGGUGCUUGUGACUGUGUUGAAAAAAAGUCAGGUACCUGAAGUAGCGCGCGGAGAACUCUGAGAUCUAGCUGCGAUAUGAAG
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Structure
        10            20        30         40        50        60  
GAGGGAGUACUAUCACU----|  UAU       A-        A         UG     GUGUU 
                     CGG   GGUUCUC  CGUGCUGC UCAGGUGCU  UGACU     G
                     GUC   UCAAGAG  GCGCGAUG AGUCCAUGG  ACUGA     A
GAAGUAUAGCGUCGAUCUAGA^  ---       GC        A         --     AAAAA 
  120       110          100        90        80          70
Deep sequencing
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CommentThere is a second Drosha cut +3 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Ge Ge So So So To
Star sequence

Lpo-Mir-275-P7_5p*
mirBase accessionNone
Sequence 
0- ACGUGCUGCAUCAGGUGCUUGUGACU -26
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Mature sequence

Lpo-Mir-275-P7_3p
mirBase accessionNone
Sequence 
40- UCAGGUACCUGAAGUAGCGCGCGG -64
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