MirGeneDB 3.0
MirGeneDB ID

Dma-Mir-275

Family name MIR-275 (all species)
Seed CAGGUAC
Species Large common water flea (Daphnia magna)
MiRBase ID
Paralogues
Orthologues Aae-Mir-275  Aga-Mir-275  Bge-Mir-275  Csc-Mir-275  Dan-Mir-275  Dlo-Mir-275  Dme-Mir-275  Dmo-Mir-275  Dpu-Mir-275  Dsi-Mir-275  Dya-Mir-275  Gpa-Mir-275  Hme-Mir-275  Isc-Mir-275  Lpo-Mir-275-P3  Lpo-Mir-275-P4-v1  Lpo-Mir-275-P4-v2  Lpo-Mir-275-P5  Lpo-Mir-275-P6  Lpo-Mir-275-P7  Tca-Mir-275 
Node of Origin (locus) Arthropoda
Node of Origin (family) Arthropoda
Genome context
(DMA_ASM399081)		 NC_046180.1: 7554925-7554989 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CAUUUCUUCCACACAUCACUGGCCACUCCUCGUGCUGCGACAGGUGCUUCCGGCUGUGUUAAUAUUUGCGAGUCAGGUACCUGAAGUAGCGCGCGGAGUGGCUCGGAACGAUCGCCAUUUUAUCG
Get precursor sequence
Structure
        10         20         30        40        50        60   
CAUUUCUUCCACACAUCA-   -|       U        GA         CC    GUGUUAA 
                   CUG GCCACUCC CGUGCUGC  CAGGUGCUU  GGCU       \
                   GGC CGGUGAGG GCGCGAUG  GUCCAUGGA  CUGA       U
GCUAUUUUACCGCUAGCAA   U^       C        AA         --    GCGUUUA 
   120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
01 02 03 04 05 06 07 08 09 10 11 12 13 14
Star sequence

Dma-Mir-275_5p*
mirBase accessionNone
Sequence 
0- CGUGCUGCGACAGGUGCUUCCGGCU -25
Get sequence
Mature sequence

Dma-Mir-275_3p
mirBase accessionNone
Sequence 
42- UCAGGUACCUGAAGUAGCGCGCG -65
Get sequence