MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-275-P4-v2

Family name MIR-275 (all species)
Seed GCUGCAU
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-275-P3  Lpo-Mir-275-P4-v1  Lpo-Mir-275-P5  Lpo-Mir-275-P6  Lpo-Mir-275-P7 
Orthologues Aae-Mir-275  Aga-Mir-275  Bge-Mir-275  Csc-Mir-275  Dan-Mir-275  Dlo-Mir-275  Dma-Mir-275  Dme-Mir-275  Dmo-Mir-275  Dpu-Mir-275  Dsi-Mir-275  Dya-Mir-275  Gpa-Mir-275  Hme-Mir-275  Isc-Mir-275  Tca-Mir-275 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Arthropoda
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013667589.1: 119392-119449 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCACCAGUUUCUGCCCAGUCGAUUCUCACGUGCUGCAUCAGGUGCUUGUGACUGUGCAUUAUAAAGUCAGGUACCUAAAGUAGCGCGCGGAGGAUUAUGGGUAAUGUCUUCUUGAAAC
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Structure
        10        20           30        40        50         
UCACCAGUUUCUGCCCAGUC--       A-|       AUC       UG     GUGCA 
                      GAUUCUC  CGUGCUGC   AGGUGCU  UGACU     \
                      UUAGGAG  GCGCGAUG   UCCAUGG  ACUGA     U
CAAAGUUCUUCUGUAAUGGGUA       GC^       AAA       --     AAUAU 
      110       100        90        80        70          60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Ge Ge So So So To
Mature sequence

Lpo-Mir-275-P4-v2_5p
mirBase accessionNone
Sequence 
0- UGCUGCAUCAGGUGCUUGUGACU -23
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Star sequence

Lpo-Mir-275-P4-v2_3p*
mirBase accessionNone
Sequence 
36- UCAGGUACCUAAAGUAGCGCGC -58
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