MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-275-P4-v1

Family name MIR-275 (all species)
Seed CGUGCUG
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-275-P3  Lpo-Mir-275-P4-v2  Lpo-Mir-275-P5  Lpo-Mir-275-P6  Lpo-Mir-275-P7 
Orthologues Aae-Mir-275  Aga-Mir-275  Bge-Mir-275  Csc-Mir-275  Dan-Mir-275  Dlo-Mir-275  Dma-Mir-275  Dme-Mir-275  Dmo-Mir-275  Dpu-Mir-275  Dsi-Mir-275  Dya-Mir-275  Gpa-Mir-275  Hme-Mir-275  Isc-Mir-275  Tca-Mir-275 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Arthropoda
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013667589.1: 119389-119451 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACGUCACCAGUUUCUGCCCAGUCGAUUCUCACGUGCUGCAUCAGGUGCUUGUGACUGUGCAUUAUAAAGUCAGGUACCUAAAGUAGCGCGCGGAGGAUUAUGGGUAAUGUCUUCUUGAAACGG
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Structure
        10           20        30         40        50        60  
ACGUCACCAGUUUCUGC---|  GUC       A-        AUC       UG    UGUGCA 
                    CCA   GAUUCUC  CGUGCUGC   AGGUGCU  UGAC      \
                    GGU   UUAGGAG  GCGCGAUG   UCCAUGG  ACUG      U
GGCAAAGUUCUUCUGUAAUG^  A--       GC        AAA       --    AAAUAU 
 120       110       100          90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Ge Ge So So So To
Mature sequence

Lpo-Mir-275-P4-v1_5p
mirBase accessionNone
Sequence 
0- ACGUGCUGCAUCAGGUGCUUGUGAC -25
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Star sequence

Lpo-Mir-275-P4-v1_3p*
mirBase accessionNone
Sequence 
39- UCAGGUACCUAAAGUAGCGCGCGG -63
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