MirGeneDB ID | Cgi-Mir-242 |
Family name |
MIR-242 (all species) |
Seed |
UGCGUAG |
Species |
Pacific oyster (Crassostrea gigas) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bfl-Mir-242
Bla-Mir-242-v1
Bla-Mir-242-v2
Bpl-Mir-242
Cbr-Mir-242
Cel-Mir-242
Cte-Mir-242
Lan-Mir-242
Lgi-Mir-242-P1
Lgi-Mir-242-P2
Npo-Mir-242
Pfl-Mir-242
Pmi-Mir-242
Sko-Mir-242
Spu-Mir-242
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
|
Genome context (CGI_GCA_000297895.1) |
scaffold507: 280160-280218 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUUCGGUGCGGAGACUUUUCCUGUAAGUGUUGCGUAGGCGUUGUGCACAGUCGGAACUGACAUCACUGUGUAUUUUGUCUACACAGCAUCCAUCAAGGAACUACAUCGACUUAGGAGG
Get precursor sequence
|
Structure | 10 20 30 40 50
UUUUCGGUGCGGAGACUU GUAA--| C UU CGGAAC
UUCCU GUGUUG GUAGGCG GUGCACAGU \
AAGGA UACGAC CAUCUGU UAUGUGUCA U
GGAGGAUUCAGCUACAUC ACUACC^ A UU CUACAG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
A- |
D- |
D- |
Eg |
F- |
Gi |
He |
Ju |
L- |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
Ea |
Fe |
Ha |
La |
Ma |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Cgi-Mir-242_5p |
mirBase accession | None |
Sequence |
0- UUGCGUAGGCGUUGUGCACAGU -22
Get sequence
|
Star sequence |
Cgi-Mir-242_3p* |
mirBase accession | None |
Sequence |
37- UGUGUAUUUUGUCUACACAGCA -59
Get sequence
|