Mir-129-P2b

MirGeneDB ID

Mal-Mir-129-P2b

Family name

MIR-129 (all species)

Seed

UUUUUGC

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-129-P1a Mal-Mir-129-P1b Mal-Mir-129-P2a

Orthologues

Aca-Mir-129-P2 Ami-Mir-129-P2 Bta-Mir-129-P2 Cfa-Mir-129-P2 Cja-Mir-129-P2 Cli-Mir-129-P2 Cmi-Mir-129-P2 Cpi-Mir-129-P2 Cpo-Mir-129-P2 Dno-Mir-129-P2 Dre-Mir-129-P2b Eca-Mir-129-P2 Ete-Mir-129-P2 Gja-Mir-129-P2 Gmo-Mir-129-P2b Hsa-Mir-129-P2 Laf-Mir-129-P2 Lch-Mir-129-P2 Loc-Mir-129-P2 Mdo-Mir-129-P2 Mml-Mir-129-P2 Mmr-Mir-129-P2 Mmu-Mir-129-P2 Mun-Mir-129-P2 Neu-Mir-129-P2 Oan-Mir-129-P2 Ocu-Mir-129-P2 Pab-Mir-129-P2 Pbv-Mir-129-P2 Pma-Mir-129-o2 Rno-Mir-129-P2 Sha-Mir-129-P2 Spt-Mir-129-P2 Sto-Mir-129-P2 Tgu-Mir-129-P2 Tni-Mir-129-P2b Xtr-Mir-129-P2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Chordata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884729.1: 892123-892187 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCUGUCAUCAUCUUUUUGUCCAUUGUGGGUCUUUUUGCGGUCUGGGCUUGCUGUUCCUAAGGCAGUAGCCAGGAAGCCCUUACCCCAAAAAGUAUCUGCAGUGGAUUCUGGCAUCUGAACCAGAU

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Structure

        10          20        30         40        50        60 
UCUGUCAUCAUCUUUUU--        UG   -|      C   CU      G UGUUCCUAA 
                   GUCCAUUG  GGU CUUUUUG GGU  GGGCUU C         G
                   UAGGUGAC  CUA GAAAAAC CCA  CCCGAA G         G
UAGACCAAGUCUACGGUCU        GU   U^      C   UU      G ACCGAUGAC 
   120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-129-P2b_5p

mirBase accession

None

Sequence

0- CUUUUUGCGGUCUGGGCUUGC -21

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Star sequence

Mal-Mir-129-P2b_3p*

mirBase accession

None

Sequence

43- AAGCCCUUACCCCAAAAAGUAU -65

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