MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-129-P2

Family name MIR-129 (all species)
Seed UUUUUGC
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-129-2
Paralogues Xtr-Mir-129-P1 
Orthologues Aca-Mir-129-P2  Ami-Mir-129-P2  Bta-Mir-129-P2  Cfa-Mir-129-P2  Cja-Mir-129-P2  Cli-Mir-129-P2  Cmi-Mir-129-P2  Cpi-Mir-129-P2  Cpo-Mir-129-P2  Dno-Mir-129-P2  Dre-Mir-129-P2a  Dre-Mir-129-P2b  Eca-Mir-129-P2  Ete-Mir-129-P2  Gja-Mir-129-P2  Gmo-Mir-129-P2a  Gmo-Mir-129-P2b  Hsa-Mir-129-P2  Laf-Mir-129-P2  Lch-Mir-129-P2  Loc-Mir-129-P2  Mal-Mir-129-P2a  Mal-Mir-129-P2b  Mdo-Mir-129-P2  Mml-Mir-129-P2  Mmr-Mir-129-P2  Mmu-Mir-129-P2  Mun-Mir-129-P2  Neu-Mir-129-P2  Oan-Mir-129-P2  Ocu-Mir-129-P2  Pab-Mir-129-P2  Pbv-Mir-129-P2  Pma-Mir-129-o2  Rno-Mir-129-P2  Sha-Mir-129-P2  Spt-Mir-129-P2  Sto-Mir-129-P2  Tgu-Mir-129-P2  Tni-Mir-129-P2a  Tni-Mir-129-P2b  Xla-Mir-129-P2c  Xla-Mir-129-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(xenTro9_add)		 chr3: 78292725-78292790 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUAGUGUCACAAUUUCUUUCUCUCUCAAAGCUUUUUGCGGUCUGGGCUUGCUGUUCUCAAUCAAAGUAUCCAGGAAGCCCUUAUCCCAAAAAGAAUUUGCGAGGGAGGAUUUUCUUCUGACUCUCU
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Structure
        10          20        30         40         50        60  
CUAGUGUCACAAUUUCU--       U    G-|      C  UCU-      G UGUUCUCAAU 
                   UUCUCUC CAAA  CUUUUUG GG    GGGCUU C          \
                   GAGGGAG GUUU  GAAAAAC CC    CCCGAA G          C
UCUCUCAGUCUUCUUUUAG       C    AA^      -  UAUU      G ACCUAUGAAA 
    120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-129-P2_5p
mirBase accessionMIMAT0003590
Sequence 
0- CUUUUUGCGGUCUGGGCUUGC -21
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Proposed targets TargetScanVert: xtr-miR-129
Star sequence

Xtr-Mir-129-P2_3p*
mirBase accessionNone
Sequence 
44- AAGCCCUUAUCCCAAAAAGAAU -66
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