MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-129-P2d

Family name MIR-129 (all species)
Seed AGCCCUU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-129-P1c  Xla-Mir-129-P1d  Xla-Mir-129-P2c  Xla-Mir-129-P4 
Orthologues Aca-Mir-129-P2  Ami-Mir-129-P2  Bta-Mir-129-P2  Cfa-Mir-129-P2  Cja-Mir-129-P2  Cli-Mir-129-P2  Cmi-Mir-129-P2  Cpi-Mir-129-P2  Cpo-Mir-129-P2  Dno-Mir-129-P2  Eca-Mir-129-P2  Ete-Mir-129-P2  Gja-Mir-129-P2  Hsa-Mir-129-P2  Laf-Mir-129-P2  Lch-Mir-129-P2  Loc-Mir-129-P2  Mdo-Mir-129-P2  Mml-Mir-129-P2  Mmr-Mir-129-P2  Mmu-Mir-129-P2  Mun-Mir-129-P2  Neu-Mir-129-P2  Oan-Mir-129-P2  Ocu-Mir-129-P2  Pab-Mir-129-P2  Pbv-Mir-129-P2  Pma-Mir-129-o2  Rno-Mir-129-P2  Sha-Mir-129-P2  Spt-Mir-129-P2  Sto-Mir-129-P2  Tgu-Mir-129-P2  Xtr-Mir-129-P2 
Node of Origin (locus) X. laevis
Node of Origin (family) Chordata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030729.1: 62832864-62832929 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUAGUACUACAAUCUCUAUCUCUCUCAAAGCUUUUUGCGGUCUGGGCUUGCUGUUCUCAGUCAAAGUAACCAGGAAGCCCUUAUCCCAAAAAGAAUUUGCGAGGGAGGAUUUUCUUCUGACUCUUU
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Structure
        10          20        30         40         50        60  
CUAGUACUACAAUCUCUA--      U    G-|      C  UCU-      G UGUUCUCAGU 
                    UCUCUC CAAA  CUUUUUG GG    GGGCUU C          \
                    AGGGAG GUUU  GAAAAAC CC    CCCGAA G          C
UUUCUCAGUCUUCUUUUAGG      C    AA^      -  UAUU      G ACCAAUGAAA 
    120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Em
Star sequence

Xla-Mir-129-P2d_5p*
mirBase accessionNone
Sequence 
0- CUUUUUGCGGUCUGGGCUUGC -21
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Mature sequence

Xla-Mir-129-P2d_3p
mirBase accessionNone
Sequence 
44- AAGCCCUUAUCCCAAAAAGAAU -66
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