MirGeneDB 2.1

MirGeneDB ID

Bta-Mir-129-P2

Family name MIR-129 (all species)
Seed UUUUUGC
Species Cow (Bos taurus)
MiRBase ID bta-mir-129-1
Paralogues Bta-Mir-129-P1 
Orthologues Aca-Mir-129-P2  Ami-Mir-129-P2  Cfa-Mir-129-P2  Cli-Mir-129-P2  Cmi-Mir-129-P2  Cpi-Mir-129-P2  Cpo-Mir-129-P2  Dno-Mir-129-P2  Dre-Mir-129-P2a  Dre-Mir-129-P2b  Ete-Mir-129-P2  Gja-Mir-129-P2  Gmo-Mir-129-P2a  Gmo-Mir-129-P2b  Hsa-Mir-129-P2  Lch-Mir-129-P2  Loc-Mir-129-P2  Mal-Mir-129-P2a  Mal-Mir-129-P2b  Mdo-Mir-129-P2  Mml-Mir-129-P2  Mmu-Mir-129-P2  Mun-Mir-129-P2  Oan-Mir-129-P2  Ocu-Mir-129-P2  Pbv-Mir-129-P2  Pma-Mir-129-o2  Rno-Mir-129-P2  Sha-Mir-129-P2  Spt-Mir-129-P2  Sto-Mir-129-P2  Tgu-Mir-129-P2  Tni-Mir-129-P2a  Tni-Mir-129-P2b  Xla-Mir-129-P2c  Xla-Mir-129-P2d  Xtr-Mir-129-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037331.1: 92407947-92408012 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCCUAGCAGGGCUUCCGGCCCCUUUGGAUCUUUUUGCGGUCUGGGCUUGCUGUUCCUCUCUACAGUAGUCAGGAAGCCCUUACCCCAAAAAGUAUCUGCGGGAGGCCUUGUCUACAGAGGCAUGC
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Structure
        10         20         30         40        50        60  
GCCCUAGCAGGGCUUCC-    -   U     -|      C   CU      G UGUUCCUCUC 
                  GGCC CCU UGGAU CUUUUUG GGU  GGGCUU C          \
                  CCGG GGG GUCUA GAAAAAC CCA  CCCGAA G          U
CGUACGGAGACAUCUGUU    A   C     U^      C   UU      G ACUGAUGACA 
    120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ad Cd Fe Bo Br Ce Co Co De He Hy Ir Ki La Lo No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-129-P2_5p

mirBase accessionMIMAT0009220
Sequence
0- CUUUUUGCGGUCUGGGCUUGC -21
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Proposed targets TargetScanVert: bta-miR-129
Star sequence

Bta-Mir-129-P2_3p*

mirBase accessionNone
Sequence
44- AAGCCCUUACCCCAAAAAGUAU -66
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