| MirGeneDB ID | Bta-Mir-129-P2 |
|---|
| Family name |
MIR-129 (all species) |
|---|
| Seed |
UUUUUGC |
|---|
| Species |
Cow (Bos taurus) |
|---|
| MiRBase ID |
bta-mir-129-1
|
|---|
| Paralogues |
Bta-Mir-129-P1
|
|---|
| Orthologues |
Aca-Mir-129-P2
Ami-Mir-129-P2
Cfa-Mir-129-P2
Cja-Mir-129-P2
Cli-Mir-129-P2
Cmi-Mir-129-P2
Cpi-Mir-129-P2
Cpo-Mir-129-P2
Dno-Mir-129-P2
Dre-Mir-129-P2a
Dre-Mir-129-P2b
Eca-Mir-129-P2
Ete-Mir-129-P2
Gja-Mir-129-P2
Gmo-Mir-129-P2a
Gmo-Mir-129-P2b
Hsa-Mir-129-P2
Laf-Mir-129-P2
Lch-Mir-129-P2
Loc-Mir-129-P2
Mal-Mir-129-P2a
Mal-Mir-129-P2b
Mdo-Mir-129-P2
Mml-Mir-129-P2
Mmr-Mir-129-P2
Mmu-Mir-129-P2
Mun-Mir-129-P2
Neu-Mir-129-P2
Oan-Mir-129-P2
Ocu-Mir-129-P2
Pab-Mir-129-P2
Pbv-Mir-129-P2
Pma-Mir-129-o2
Rno-Mir-129-P2
Sha-Mir-129-P2
Spt-Mir-129-P2
Sto-Mir-129-P2
Tgu-Mir-129-P2
Tni-Mir-129-P2a
Tni-Mir-129-P2b
Xla-Mir-129-P2c
Xla-Mir-129-P2d
Xtr-Mir-129-P2
|
|---|
| Node of Origin (locus) |
Gnathostomata
|
|---|
| Node of Origin (family) |
Chordata
|
|---|
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037331.1: 92407947-92408012 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GCCCUAGCAGGGCUUCCGGCCCCUUUGGAUCUUUUUGCGGUCUGGGCUUGCUGUUCCUCUCUACAGUAGUCAGGAAGCCCUUACCCCAAAAAGUAUCUGCGGGAGGCCUUGUCUACAGAGGCAUGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GCCCUAGCAGGGCUUCC- - U -| C CU G UGUUCCUCUC
GGCC CCU UGGAU CUUUUUG GGU GGGCUU C \
CCGG GGG GUCUA GAAAAAC CCA CCCGAA G U
CGUACGGAGACAUCUGUU A C U^ C UU G ACUGAUGACA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
| Ad |
Bo |
Br |
Ce |
Co |
Co |
De |
Fe |
He |
Hy |
Ir |
Ki |
La |
Lo |
Mi |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Bta-Mir-129-P2_5p |
| mirBase accession | MIMAT0009220 |
|---|
| Sequence |
0- CUUUUUGCGGUCUGGGCUUGC -21
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: bta-miR-129
|
|---|
| Star sequence |
Bta-Mir-129-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
44- AAGCCCUUACCCCAAAAAGUAU -66
Get sequence
|
|---|
