MirGeneDB 3.0

MirGeneDB ID

Tni-Mir-129-P2b

Family name MIR-129 (all species)
Seed UUUUUGC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-129-2
Paralogues Tni-Mir-129-P1a  Tni-Mir-129-P1b  Tni-Mir-129-P2a 
Orthologues Aca-Mir-129-P2  Ami-Mir-129-P2  Bta-Mir-129-P2  Cfa-Mir-129-P2  Cja-Mir-129-P2  Cli-Mir-129-P2  Cmi-Mir-129-P2  Cpi-Mir-129-P2  Cpo-Mir-129-P2  Dno-Mir-129-P2  Dre-Mir-129-P2b  Eca-Mir-129-P2  Ete-Mir-129-P2  Gja-Mir-129-P2  Gmo-Mir-129-P2b  Hsa-Mir-129-P2  Laf-Mir-129-P2  Lch-Mir-129-P2  Loc-Mir-129-P2  Mal-Mir-129-P2b  Mdo-Mir-129-P2  Mml-Mir-129-P2  Mmr-Mir-129-P2  Mmu-Mir-129-P2  Mun-Mir-129-P2  Neu-Mir-129-P2  Oan-Mir-129-P2  Ocu-Mir-129-P2  Pab-Mir-129-P2  Pbv-Mir-129-P2  Pma-Mir-129-o2  Rno-Mir-129-P2  Sha-Mir-129-P2  Spt-Mir-129-P2  Sto-Mir-129-P2  Tgu-Mir-129-P2  Xtr-Mir-129-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Chordata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
19: 2390426-2390490 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAACUCUCCACCUUCUGUCCUCUGCGGGUCUUUUUGCGGUCUGGGCUUGCUGUUCCUAAGGCAGUAGCCAGGAAGCCCUUACCCCAAAAAGUAUCUGCACUGGAUCCCAGCAUCAGGAGCCAGG
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Structure
        10          20        30         40        50        60 
UGAACUCUCCACCUUCU--    UC       -|      C   CU      G UGUUCCUAA 
                   GUCC  UGCGGGU CUUUUUG GGU  GGGCUU C         G
                   UAGG  ACGUCUA GAAAAAC CCA  CCCGAA G         G
GGACCGAGGACUACGACCC    UC       U^      C   UU      G ACCGAUGAC 
   120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Sp Sp Sp To
Mature sequence

Tni-Mir-129-P2b_5p

mirBase accessionMIMAT0003036
Sequence
0- CUUUUUGCGGUCUGGGCUUGC -21
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Star sequence

Tni-Mir-129-P2b_3p* (predicted)

mirBase accessionNone
Sequence
43- AAGCCCUUACCCCAAAAAGUAU -65
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