MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-129-P1a

Family name MIR-129 (all species)
Seed AGCCCUU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-129-1
Paralogues Tni-Mir-129-P1b  Tni-Mir-129-P2a  Tni-Mir-129-P2b 
Orthologues Ami-Mir-129-P1  Bta-Mir-129-P1  Cfa-Mir-129-P1  Cja-Mir-129-P1  Cpi-Mir-129-P1  Cpo-Mir-129-P1  Dno-Mir-129-P1  Dre-Mir-129-P1a  Eca-Mir-129-P1  Ete-Mir-129-P1  Gga-Mir-129-P1  Gja-Mir-129-P1  Gmo-Mir-129-P1a  Hsa-Mir-129-P1  Laf-Mir-129-P1  Lch-Mir-129-P1  Loc-Mir-129-P1  Mal-Mir-129-P1a  Mml-Mir-129-P1  Mmr-Mir-129-P1  Mmu-Mir-129-P1  Mun-Mir-129-P1  Neu-Mir-129-P1  Oan-Mir-129-P1  Ocu-Mir-129-P1  Pab-Mir-129-P1  Pbv-Mir-129-P1  Pma-Mir-129-o1  Rno-Mir-129-P1  Sha-Mir-129-P1  Spt-Mir-129-P1  Tgu-Mir-129-P1  Xtr-Mir-129-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Chordata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 13: 12882721-12882781 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUGACUCCACCAGGAUGUCCUUCACGAAUCUUUUUGCGGUCUGGGCUUGCUGUUCUCUGCUCACCCGGAAGCCCUUACCCCAAAAAGCAUUUGCGGGGGGCGCGAUCAGCGCACGUCCAG
Get precursor sequence
Structure
        10          20        30         40        50         
GCUGACUCCACCAGGAU--       A     -|      C   CU      GCUGUUCUC 
                   GUCCUUC CGAAU CUUUUUG GGU  GGGCUU         U
                   CGGGGGG GUUUA GAAAAAC CCA  CCCGAA         G
GACCUGCACGCGACUAGCG       C     C^      C   UU      GGCCCACUC 
 .       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-129-P1a_5p*
mirBase accessionMIMAT0003036
Sequence 
0- CUUUUUGCGGUCUGGGCUUGC -21
Get sequence
Mature sequence

Tni-Mir-129-P1a_3p
mirBase accessionNone
Sequence 
39- AAGCCCUUACCCCAAAAAGCAU -61
Get sequence