MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-129-o1

Family name MIR-129 (all species)
Seed UUUUUGC
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-129a
Paralogues Pma-Mir-129-o2 
Orthologues Ami-Mir-129-P1  Bta-Mir-129-P1  Cfa-Mir-129-P1  Cja-Mir-129-P1  Cpi-Mir-129-P1  Cpo-Mir-129-P1  Dno-Mir-129-P1  Dre-Mir-129-P1a  Dre-Mir-129-P1b  Eca-Mir-129-P1  Ete-Mir-129-P1  Gga-Mir-129-P1  Gja-Mir-129-P1  Gmo-Mir-129-P1a  Gmo-Mir-129-P1b  Hsa-Mir-129-P1  Laf-Mir-129-P1  Lch-Mir-129-P1  Loc-Mir-129-P1  Mal-Mir-129-P1a  Mal-Mir-129-P1b  Mml-Mir-129-P1  Mmr-Mir-129-P1  Mmu-Mir-129-P1  Mun-Mir-129-P1  Neu-Mir-129-P1  Oan-Mir-129-P1  Ocu-Mir-129-P1  Pab-Mir-129-P1  Pbv-Mir-129-P1  Rno-Mir-129-P1  Sha-Mir-129-P1  Spt-Mir-129-P1  Tgu-Mir-129-P1  Tni-Mir-129-P1a  Tni-Mir-129-P1b  Xla-Mir-129-P1c  Xla-Mir-129-P1d  Xtr-Mir-129-P1 
Node of Origin (locus) P. marinus
Node of Origin (family) Chordata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046075.1: 14326346-14326407 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCGACACUACGGUGGCUGUCUCUCGCGAAUCUUUUUGCGGUUUGGGCUUGCUGUUCAUCUAAUAGCCGGCAAGCCCUUACCCCAAAAAGCAUUCGAGGGGGAUGCUUGGCAUCGUCAUCGUC
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Structure
        10          20        30         40        50          
UCGACACUACGGUGGCU--       G     -|      C   UU         GUUCAUC 
                   GUCUCUC CGAAU CUUUUUG GGU  GGGCUUGCU       \
                   UAGGGGG GCUUA GAAAAAC CCA  CCCGAACGG       U
CUGCUACUGCUACGGUUCG       A     C^      C   UU         CCGAUAA 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-129-o1_5p
mirBase accessionMIMAT0019450
Sequence 
0- CUUUUUGCGGUUUGGGCUUGCU -22
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Star sequence

Pma-Mir-129-o1_3p*
mirBase accessionMIMAT0019451
Sequence 
40- AAGCCCUUACCCCAAAAAGCAU -62
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