Mir-129-P1

MirGeneDB ID

Sha-Mir-129-P1

Family name

MIR-129 (all species)

Seed

UUUUUGC

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-129-P2

Orthologues

Ami-Mir-129-P1 Bta-Mir-129-P1 Cfa-Mir-129-P1 Cja-Mir-129-P1 Cpi-Mir-129-P1 Cpo-Mir-129-P1 Dno-Mir-129-P1 Dre-Mir-129-P1a Dre-Mir-129-P1b Eca-Mir-129-P1 Ete-Mir-129-P1 Gga-Mir-129-P1 Gja-Mir-129-P1 Gmo-Mir-129-P1a Gmo-Mir-129-P1b Hsa-Mir-129-P1 Laf-Mir-129-P1 Lch-Mir-129-P1 Loc-Mir-129-P1 Mal-Mir-129-P1a Mal-Mir-129-P1b Mml-Mir-129-P1 Mmr-Mir-129-P1 Mmu-Mir-129-P1 Mun-Mir-129-P1 Neu-Mir-129-P1 Oan-Mir-129-P1 Ocu-Mir-129-P1 Pab-Mir-129-P1 Pbv-Mir-129-P1 Pma-Mir-129-o1 Rno-Mir-129-P1 Spt-Mir-129-P1 Tgu-Mir-129-P1 Tni-Mir-129-P1a Tni-Mir-129-P1b Xla-Mir-129-P1c Xla-Mir-129-P1d Xtr-Mir-129-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Chordata

Genome context
(DEVIL_add)

GL864892.1: 59836-59900 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGACGACGAGAGACUUUGUUCUUCGCGAAUCUUUUUGCGGUCUGGGCUUGCUGUAUAUAACUAUGUAGCCGGGAAGCCCUUACCCCAAAAAGCAUUCGAGGAGGACACAAUCGCCGAGGAAUCAU

Get precursor sequence

Structure

        10          20        30         40        50        60 
AGACGACGAGAGACUUU--       G     -|      C   CU      G UGUAUAUAA 
                   GUUCUUC CGAAU CUUUUUG GGU  GGGCUU C         C
                   CAGGAGG GCUUA GAAAAAC CCA  CCCGAA G         U
UACUAAGGAGCCGCUAACA       A     C^      C   UU      G GCCGAUGUA 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-129-P1_5p

mirBase accession

None

Sequence

0- CUUUUUGCGGUCUGGGCUUGC -21

Get sequence

Star sequence

Sha-Mir-129-P1_3p*

mirBase accession

None

Sequence

43- AAGCCCUUACCCCAAAAAGCAU -65

Get sequence