Mir-129-P1

MirGeneDB ID

Hsa-Mir-129-P1

Family name

MIR-129 (all species)

Seed

AGCCCUU

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-129-2

Paralogues

Hsa-Mir-129-P2

Orthologues

Ami-Mir-129-P1 Bta-Mir-129-P1 Cfa-Mir-129-P1 Cja-Mir-129-P1 Cpi-Mir-129-P1 Cpo-Mir-129-P1 Dno-Mir-129-P1 Dre-Mir-129-P1a Dre-Mir-129-P1b Eca-Mir-129-P1 Ete-Mir-129-P1 Gga-Mir-129-P1 Gja-Mir-129-P1 Gmo-Mir-129-P1a Gmo-Mir-129-P1b Laf-Mir-129-P1 Lch-Mir-129-P1 Loc-Mir-129-P1 Mal-Mir-129-P1a Mal-Mir-129-P1b Mml-Mir-129-P1 Mmr-Mir-129-P1 Mmu-Mir-129-P1 Mun-Mir-129-P1 Neu-Mir-129-P1 Oan-Mir-129-P1 Ocu-Mir-129-P1 Pab-Mir-129-P1 Pbv-Mir-129-P1 Pma-Mir-129-o1 Rno-Mir-129-P1 Sha-Mir-129-P1 Spt-Mir-129-P1 Tgu-Mir-129-P1 Tni-Mir-129-P1a Tni-Mir-129-P1b Xla-Mir-129-P1c Xla-Mir-129-P1d Xtr-Mir-129-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Chordata

Genome context
(hg38)

chr11: 43581408-43581471 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-129-P1)

Mir-670 chr11: 43559675-43559738 [+] UCSC Ensembl
Mir-129-P1 chr11: 43581408-43581471 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGAAGCCGGCAUAUUCUGCCCUUCGCGAAUCUUUUUGCGGUCUGGGCUUGCUGUACAUAACUCAAUAGCCGGAAGCCCUUACCCCAAAAAGCAUUUGCGGAGGGCGCACUCGUCGAGAAGACGG

Get precursor sequence

Structure

        10          20        30         40        50        60 
AGAAGCCGGCAUAUUCU--             -|      C   CU      GCUGUACAUAA 
                   GCCCUUCGCGAAU CUUUUUG GGU  GGGCUU           \
                   CGGGAGGCGUUUA GAAAAAC CCA  CCCGAA           C
GGCAGAAGAGCUGCUCACG             C^      C   UU      GGCCGAUAACU 
  120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Star sequence

Hsa-Mir-129-P1_5p*

mirBase accession

MIMAT0000242

Sequence

0- CUUUUUGCGGUCUGGGCUUGC -21

Get sequence

Proposed targets

microrna.org: MIMAT0000242
TargetScanVert: hsa-miR-129-5p
miRDB: MIMAT0000242

Mature sequence

Hsa-Mir-129-P1_3p

mirBase accession

MIMAT0004605

Sequence

42- AAGCCCUUACCCCAAAAAGCAU -64

Get sequence

Proposed targets

microrna.org: MIMAT0004605
TargetScanVert: hsa-miR-129-2-3p
TargetMiner: hsa-miR-129-2-3p
miRDB: MIMAT0004605