Mir-129-P1

MirGeneDB ID

Hsa-Mir-129-P1

Family name

MIR-129 (all species)

Seed

AGCCCUU

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-129-2

Paralogues

Hsa-Mir-129-P2

Orthologues

Ami-Mir-129-P1 Bta-Mir-129-P1 Cfa-Mir-129-P1 Cpi-Mir-129-P1 Cpo-Mir-129-P1 Dno-Mir-129-P1 Dre-Mir-129-P1a Dre-Mir-129-P1b Ete-Mir-129-P1 Gga-Mir-129-P1 Gja-Mir-129-P1 Gmo-Mir-129-P1a Gmo-Mir-129-P1b Lch-Mir-129-P1 Loc-Mir-129-P1 Mal-Mir-129-P1a Mal-Mir-129-P1b Mml-Mir-129-P1 Mmu-Mir-129-P1 Mun-Mir-129-P1 Oan-Mir-129-P1 Ocu-Mir-129-P1 Pbv-Mir-129-P1 Pma-Mir-129-o1 Rno-Mir-129-P1 Sha-Mir-129-P1 Spt-Mir-129-P1 Tgu-Mir-129-P1 Tni-Mir-129-P1a Tni-Mir-129-P1b Xla-Mir-129-P1c Xla-Mir-129-P1d Xtr-Mir-129-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Chordata

Genome context
(hg38)

chr11: 43581408-43581471 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-129-P1)

Mir-670 chr11: 43559675-43559738 [+] UCSC Ensembl
Mir-129-P1 chr11: 43581408-43581471 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGAAGCCGGCAUAUUCUGCCCUUCGCGAAUCUUUUUGCGGUCUGGGCUUGCUGUACAUAACUCAAUAGCCGGAAGCCCUUACCCCAAAAAGCAUUUGCGGAGGGCGCACUCGUCGAGAAGACGG

Get precursor sequence

Structure

        10          20        30         40        50        60 
AGAAGCCGGCAUAUUCU--             -|      C   CU      GCUGUACAUAA 
                   GCCCUUCGCGAAU CUUUUUG GGU  GGGCUU           \
                   CGGGAGGCGUUUA GAAAAAC CCA  CCCGAA           C
GGCAGAAGAGCUGCUCACG             C^      C   UU      GGCCGAUAACU 
  120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	2-	2-	2-	2-	2-	2-	2-	2-	2-	2-	2-	3-	3-	3-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	5-	5-	5-	5-	5-	5-	5-	6-	6-	6-	6-	6-

Star sequence

Hsa-Mir-129-P1_5p*

mirBase accession

MIMAT0000242

Sequence

0- CUUUUUGCGGUCUGGGCUUGC -21

Get sequence

Proposed targets

microrna.org: MIMAT0000242
TargetScanVert: hsa-miR-129-5p
miRDB: MIMAT0000242

Mature sequence

Hsa-Mir-129-P1_3p

mirBase accession

MIMAT0004605

Sequence

42- AAGCCCUUACCCCAAAAAGCAU -64

Get sequence

Proposed targets

microrna.org: MIMAT0004605
TargetScanVert: hsa-miR-129-2-3p
TargetMiner: hsa-miR-129-2-3p
miRDB: MIMAT0004605