MirGeneDB ID | Loc-Mir-129-P1 |
Family name |
MIR-129 (all species) |
Seed |
UUUUUGC |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
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Paralogues |
Loc-Mir-129-P2
|
Orthologues |
Ami-Mir-129-P1
Bta-Mir-129-P1
Cfa-Mir-129-P1
Cja-Mir-129-P1
Cpi-Mir-129-P1
Cpo-Mir-129-P1
Dno-Mir-129-P1
Dre-Mir-129-P1a
Dre-Mir-129-P1b
Eca-Mir-129-P1
Ete-Mir-129-P1
Gga-Mir-129-P1
Gja-Mir-129-P1
Gmo-Mir-129-P1a
Gmo-Mir-129-P1b
Hsa-Mir-129-P1
Laf-Mir-129-P1
Lch-Mir-129-P1
Mal-Mir-129-P1a
Mal-Mir-129-P1b
Mml-Mir-129-P1
Mmr-Mir-129-P1
Mmu-Mir-129-P1
Mun-Mir-129-P1
Neu-Mir-129-P1
Oan-Mir-129-P1
Ocu-Mir-129-P1
Pab-Mir-129-P1
Pbv-Mir-129-P1
Pma-Mir-129-o1
Rno-Mir-129-P1
Sha-Mir-129-P1
Spt-Mir-129-P1
Tgu-Mir-129-P1
Tni-Mir-129-P1a
Tni-Mir-129-P1b
Xla-Mir-129-P1c
Xla-Mir-129-P1d
Xtr-Mir-129-P1
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Chordata
|
Genome context (LepOcu1) |
LG27: 1174728-1174792 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGAUAAGGAAUGUCAAUGUCCUUCGCGAAUCUUUUUGCGGUCUGGGCUUGCUGUUUAUAACUAUCAAGCCGGGAAGCCCUUACCCCAAAAAGCAUUUGCGGAGGGCGCAUUCGCCGACUCGAACG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GGAUAAGGAAUGUCAAU-- -| C CU G UGUUUAUAA
GUCCUUCGCGAAU CUUUUUG GGU GGGCUU C C
CGGGAGGCGUUUA GAAAAAC CCA CCCGAA G U
GCAAGCUCAGCCGCUUACG C^ C UU G GCCGAACUA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Mature sequence |
Loc-Mir-129-P1_5p |
mirBase accession | None |
Sequence |
0- CUUUUUGCGGUCUGGGCUUGC -21
Get sequence
|
Co-mature sequence |
Loc-Mir-129-P1_3p |
mirBase accession | None |
Sequence |
43- AAGCCCUUACCCCAAAAAGCAU -65
Get sequence
|