MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-129-P1b

Family name MIR-129 (all species)
Seed AGCCCUU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-129-P1a  Tni-Mir-129-P2a  Tni-Mir-129-P2b 
Orthologues Ami-Mir-129-P1  Bta-Mir-129-P1  Cfa-Mir-129-P1  Cja-Mir-129-P1  Cpi-Mir-129-P1  Cpo-Mir-129-P1  Dno-Mir-129-P1  Dre-Mir-129-P1b  Eca-Mir-129-P1  Ete-Mir-129-P1  Gga-Mir-129-P1  Gja-Mir-129-P1  Gmo-Mir-129-P1b  Hsa-Mir-129-P1  Laf-Mir-129-P1  Lch-Mir-129-P1  Loc-Mir-129-P1  Mal-Mir-129-P1b  Mml-Mir-129-P1  Mmr-Mir-129-P1  Mmu-Mir-129-P1  Mun-Mir-129-P1  Neu-Mir-129-P1  Oan-Mir-129-P1  Ocu-Mir-129-P1  Pab-Mir-129-P1  Pbv-Mir-129-P1  Pma-Mir-129-o1  Rno-Mir-129-P1  Sha-Mir-129-P1  Spt-Mir-129-P1  Tgu-Mir-129-P1  Xtr-Mir-129-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Chordata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 5: 11469568-11469630 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGGGCAGCUGGAAGUUGUCCGUCACGAAUCUUUUUGCGGUCUGGGCUUGCUGUGUAUACACGAGUGCGGGAAGCCCUUACCCCAAAAAGCAUUUGUGGAGGAUGUGAGCGUCGAUCCUGCUU
Get precursor sequence
Structure
        10          20        30         40        50        60
GGGGGCAGCUGGAAGUU--    GU       -|      C   CU      G UGUGUAUA 
                   GUCC  CACGAAU CUUUUUG GGU  GGGCUU C        C
                   UAGG  GUGUUUA GAAAAAC CCA  CCCGAA G        A
UUCGUCCUAGCUGCGAGUG    AG       C^      C   UU      G GCGUGAGC 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-129-P1b_5p*
mirBase accessionNone
Sequence 
0- CUUUUUGCGGUCUGGGCUUGC -21
Get sequence
Mature sequence

Tni-Mir-129-P1b_3p
mirBase accessionNone
Sequence 
41- AAGCCCUUACCCCAAAAAGCAU -63
Get sequence