MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-129-P1b

Family name MIR-129 (all species)
Seed AGCCCUU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-129-3
Paralogues Gmo-Mir-129-P1a  Gmo-Mir-129-P2a  Gmo-Mir-129-P2b 
Orthologues Ami-Mir-129-P1  Bta-Mir-129-P1  Cfa-Mir-129-P1  Cja-Mir-129-P1  Cpi-Mir-129-P1  Cpo-Mir-129-P1  Dno-Mir-129-P1  Dre-Mir-129-P1b  Eca-Mir-129-P1  Ete-Mir-129-P1  Gga-Mir-129-P1  Gja-Mir-129-P1  Hsa-Mir-129-P1  Laf-Mir-129-P1  Lch-Mir-129-P1  Loc-Mir-129-P1  Mal-Mir-129-P1b  Mml-Mir-129-P1  Mmr-Mir-129-P1  Mmu-Mir-129-P1  Mun-Mir-129-P1  Neu-Mir-129-P1  Oan-Mir-129-P1  Ocu-Mir-129-P1  Pab-Mir-129-P1  Pbv-Mir-129-P1  Pma-Mir-129-o1  Rno-Mir-129-P1  Sha-Mir-129-P1  Spt-Mir-129-P1  Tgu-Mir-129-P1  Tni-Mir-129-P1b  Xtr-Mir-129-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Chordata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
contig741416: 75-133 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGGGACGGGGGCUGAUUGUCCGUCACGAUUCUUUUUGCGGUCUGGGCUUGCUGUGAUCGUGAUCUGGAAGCCCUUACCCCAAAAAGCAUUCGUGGAGGACGCAGACACAGAGGCCACGG
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Structure
        10          20        30         40        50        
CGGGACGGGGGCUGAUU--    GU     UU-|      C   CU      GCUGUGAU 
                   GUCC  CACGA   CUUUUUG GGU  GGGCUU        C
                   CAGG  GUGCU   GAAAAAC CCA  CCCGAA        G
GGCACCGGAGACACAGACG    AG     UAC^      C   UU      GGUCUAGU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-129-P1b_5p*

mirBase accessionMIMAT0044074
Sequence
0- CUUUUUGCGGUCUGGGCUUGC -21
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Mature sequence

Gmo-Mir-129-P1b_3p

mirBase accessionMIMAT0044075
Sequence
37- AAGCCCUUACCCCAAAAAGCAU -59
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