| MirGeneDB ID | Gmo-Mir-129-P1a |
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| Family name |
MIR-129 (all species) |
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| Seed |
AGCCCUU |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-129-1
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| Paralogues |
Gmo-Mir-129-P1b
Gmo-Mir-129-P2a
Gmo-Mir-129-P2b
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| Orthologues |
Ami-Mir-129-P1
Bta-Mir-129-P1
Cfa-Mir-129-P1
Cja-Mir-129-P1
Cpi-Mir-129-P1
Cpo-Mir-129-P1
Dno-Mir-129-P1
Dre-Mir-129-P1a
Eca-Mir-129-P1
Ete-Mir-129-P1
Gga-Mir-129-P1
Gja-Mir-129-P1
Hsa-Mir-129-P1
Laf-Mir-129-P1
Lch-Mir-129-P1
Loc-Mir-129-P1
Mal-Mir-129-P1a
Mml-Mir-129-P1
Mmr-Mir-129-P1
Mmu-Mir-129-P1
Mun-Mir-129-P1
Neu-Mir-129-P1
Oan-Mir-129-P1
Ocu-Mir-129-P1
Pab-Mir-129-P1
Pbv-Mir-129-P1
Pma-Mir-129-o1
Rno-Mir-129-P1
Sha-Mir-129-P1
Spt-Mir-129-P1
Tgu-Mir-129-P1
Tni-Mir-129-P1a
Xtr-Mir-129-P1
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| Node of Origin (locus) |
Clupeocephala
|
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| Node of Origin (family) |
Chordata
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_2632: 72857-72921 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GCACCAUGAGUCGAUAUGUCCUUCGCGAAUCUUUUUGCGGUCUGGGCUUGCUGUUCAUAACUAAUAAGCUGGGAAGCCCUUACCCCAAAAAGCAUUCGCGGAGGGCGCGCGCGCCGUGCCGAGCC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GCACCAUGAGUCGAUAU-- -| C CU G UGUUCAUAA
GUCCUUCGCGAAU CUUUUUG GGU GGGCUU C C
CGGGAGGCGCUUA GAAAAAC CCA CCCGAA G U
CCGAGCCGUGCCGCGCGCG C^ C UU G GUCGAAUAA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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|
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| Star sequence |
Gmo-Mir-129-P1a_5p* |
| mirBase accession | MIMAT0044203 |
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| Sequence |
0- CUUUUUGCGGUCUGGGCUUGC -21
Get sequence
|
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| Mature sequence |
Gmo-Mir-129-P1a_3p |
| mirBase accession | MIMAT0044075 |
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| Sequence |
43- AAGCCCUUACCCCAAAAAGCAU -65
Get sequence
|
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