| MirGeneDB ID | Mal-Mir-129-P1a |
|---|
| Family name |
MIR-129 (all species) |
|---|
| Seed |
UUUUUGC |
|---|
| Species |
Asian swamp eel (Monopterus albus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Mal-Mir-129-P1b
Mal-Mir-129-P2a
Mal-Mir-129-P2b
|
|---|
| Orthologues |
Ami-Mir-129-P1
Bta-Mir-129-P1
Cfa-Mir-129-P1
Cpi-Mir-129-P1
Cpo-Mir-129-P1
Dno-Mir-129-P1
Dre-Mir-129-P1a
Ete-Mir-129-P1
Gga-Mir-129-P1
Gja-Mir-129-P1
Gmo-Mir-129-P1a
Hsa-Mir-129-P1
Lch-Mir-129-P1
Loc-Mir-129-P1
Mml-Mir-129-P1
Mmu-Mir-129-P1
Mun-Mir-129-P1
Oan-Mir-129-P1
Ocu-Mir-129-P1
Pbv-Mir-129-P1
Pma-Mir-129-o1
Rno-Mir-129-P1
Sha-Mir-129-P1
Spt-Mir-129-P1
Tgu-Mir-129-P1
Tni-Mir-129-P1a
Xtr-Mir-129-P1
|
|---|
| Node of Origin (locus) |
Clupeocephala
|
|---|
| Node of Origin (family) |
Chordata
|
|---|
Genome context
(GCA_001952655.1_M_albus_1.0_genomic) |
KV884695.1: 5679857-5679921 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CAGCAGCAGCAGAUAAUGCCCUUCACGAAUCUUUUUGCGGUCUGGGCUUGCUGUUCAUAACUAUUAAUCUGGGAAGCCCUUACCCCAAAAAGCAUUUGCGGAGGGCGCAAUCGUCGCGCCGAGAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CAGCAGCAGCAGAUAAU-- A -| C CU G UGUUCAUAA
GCCCUUC CGAAU CUUUUUG GGU GGGCUU C C
CGGGAGG GUUUA GAAAAAC CCA CCCGAA G U
CAGAGCCGCGCUGCUAACG C C^ C UU G GUCUAAUUA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Mal-Mir-129-P1a_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CUUUUUGCGGUCUGGGCUUGC -21
Get sequence
|
|---|
| Star sequence |
Mal-Mir-129-P1a_3p* |
| mirBase accession | None |
|---|
| Sequence |
43- AAGCCCUUACCCCAAAAAGCAU -65
Get sequence
|
|---|
