MirGeneDB 3.0
MirGeneDB ID

Tgu-Mir-129-P1

Family name MIR-129 (all species)
Seed UUUUUGC
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-129
Paralogues Tgu-Mir-129-P2 
Orthologues Ami-Mir-129-P1  Bta-Mir-129-P1  Cfa-Mir-129-P1  Cja-Mir-129-P1  Cpi-Mir-129-P1  Cpo-Mir-129-P1  Dno-Mir-129-P1  Dre-Mir-129-P1a  Dre-Mir-129-P1b  Eca-Mir-129-P1  Ete-Mir-129-P1  Gga-Mir-129-P1  Gja-Mir-129-P1  Gmo-Mir-129-P1a  Gmo-Mir-129-P1b  Hsa-Mir-129-P1  Laf-Mir-129-P1  Lch-Mir-129-P1  Loc-Mir-129-P1  Mal-Mir-129-P1a  Mal-Mir-129-P1b  Mml-Mir-129-P1  Mmr-Mir-129-P1  Mmu-Mir-129-P1  Mun-Mir-129-P1  Neu-Mir-129-P1  Oan-Mir-129-P1  Ocu-Mir-129-P1  Pab-Mir-129-P1  Pbv-Mir-129-P1  Pma-Mir-129-o1  Rno-Mir-129-P1  Sha-Mir-129-P1  Spt-Mir-129-P1  Tni-Mir-129-P1a  Tni-Mir-129-P1b  Xla-Mir-129-P1c  Xla-Mir-129-P1d  Xtr-Mir-129-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(TaeGut1_add)		 5: 21111818-21111882 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGCCGCGGGAGACUUUGUCCUUCGCGAAUCUUUUUGCGGUCUGGGCUUGCUGUACAUAACUACCUACCCGGGAAGCCCUUACCCCAAAAAGCAUUCGCGGAGGGCGCAUUCGCCGAAGGAGCAG
Get precursor sequence
Structure
        10          20        30         40        50        60 
AAGCCGCGGGAGACUUU--             -|      C   CU      G UGUACAUAA 
                   GUCCUUCGCGAAU CUUUUUG GGU  GGGCUU C         C
                   CGGGAGGCGCUUA GAAAAAC CCA  CCCGAA G         U
GACGAGGAAGCCGCUUACG             C^      C   UU      G GCCCAUCCA 
   120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-129-P1_5p
mirBase accessionMIMAT0014625
Sequence 
0- CUUUUUGCGGUCUGGGCUUGC -21
Get sequence
Star sequence

Tgu-Mir-129-P1_3p*
mirBase accessionMIMAT0014499
Sequence 
43- AAGCCCUUACCCCAAAAAGCAU -65
Get sequence