MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-129-P1

Family name MIR-129 (all species)
Seed UUUUUGC
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-129-P2  Lch-Mir-129-P4 
Orthologues Ami-Mir-129-P1  Bta-Mir-129-P1  Cfa-Mir-129-P1  Cja-Mir-129-P1  Cpi-Mir-129-P1  Cpo-Mir-129-P1  Dno-Mir-129-P1  Dre-Mir-129-P1a  Dre-Mir-129-P1b  Eca-Mir-129-P1  Ete-Mir-129-P1  Gga-Mir-129-P1  Gja-Mir-129-P1  Gmo-Mir-129-P1a  Gmo-Mir-129-P1b  Hsa-Mir-129-P1  Laf-Mir-129-P1  Loc-Mir-129-P1  Mal-Mir-129-P1a  Mal-Mir-129-P1b  Mml-Mir-129-P1  Mmr-Mir-129-P1  Mmu-Mir-129-P1  Mun-Mir-129-P1  Neu-Mir-129-P1  Oan-Mir-129-P1  Ocu-Mir-129-P1  Pab-Mir-129-P1  Pbv-Mir-129-P1  Pma-Mir-129-o1  Rno-Mir-129-P1  Sha-Mir-129-P1  Spt-Mir-129-P1  Tgu-Mir-129-P1  Tni-Mir-129-P1a  Tni-Mir-129-P1b  Xla-Mir-129-P1c  Xla-Mir-129-P1d  Xtr-Mir-129-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(LatCha1_add)
JH126568.1: 1769986-1770050 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CUGGAUUGGGAAGAAUUGUCCUCCUCGAAUCUUUUUGCGGUCUGGGCUUGCUGUAAAUGAAUACCUAUCCGGGAAGCCCUUACCCCAAAAAGCAUUUGCGGAGGGCGUACUCGCCGAGAUCCUGG
Get precursor sequence
Structure
        10          20        30         40        50        60 
CUGGAUUGGGAAGAAUU--       U     -|      C   CU      G UGUAAAUGA 
                   GUCCUCC CGAAU CUUUUUG GGU  GGGCUU C         A
                   CGGGAGG GUUUA GAAAAAC CCA  CCCGAA G         U
GGUCCUAGAGCCGCUCAUG       C     C^      C   UU      G GCCUAUCCA 
   120       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Mature sequence

Lch-Mir-129-P1_5p (predicted)

mirBase accessionNone
Sequence
0- CUUUUUGCGGUCUGGGCUUGC -21
Get sequence
Star sequence

Lch-Mir-129-P1_3p* (predicted)

mirBase accessionNone
Sequence
43- AAGCCCUUACCCCAAAAAGCAU -65
Get sequence