| MirGeneDB ID | Pab-Mir-129-P1 |
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| Family name |
MIR-129 (all species) |
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| Seed |
AGCCCUU |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
|
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| Paralogues |
Pab-Mir-129-P2
|
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| Orthologues |
Ami-Mir-129-P1
Bta-Mir-129-P1
Cfa-Mir-129-P1
Cja-Mir-129-P1
Cpi-Mir-129-P1
Cpo-Mir-129-P1
Dno-Mir-129-P1
Dre-Mir-129-P1a
Dre-Mir-129-P1b
Eca-Mir-129-P1
Ete-Mir-129-P1
Gga-Mir-129-P1
Gja-Mir-129-P1
Gmo-Mir-129-P1a
Gmo-Mir-129-P1b
Hsa-Mir-129-P1
Laf-Mir-129-P1
Lch-Mir-129-P1
Loc-Mir-129-P1
Mal-Mir-129-P1a
Mal-Mir-129-P1b
Mml-Mir-129-P1
Mmr-Mir-129-P1
Mmu-Mir-129-P1
Mun-Mir-129-P1
Neu-Mir-129-P1
Oan-Mir-129-P1
Ocu-Mir-129-P1
Pbv-Mir-129-P1
Pma-Mir-129-o1
Rno-Mir-129-P1
Sha-Mir-129-P1
Spt-Mir-129-P1
Tgu-Mir-129-P1
Tni-Mir-129-P1a
Tni-Mir-129-P1b
Xla-Mir-129-P1c
Xla-Mir-129-P1d
Xtr-Mir-129-P1
|
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| Node of Origin (locus) |
Gnathostomata
|
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| Node of Origin (family) |
Chordata
|
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054688.2: 23563359-23563422 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGAAGCCGGCAUAUUCUGCCCUUCGCGAAUCUUUUUGCGGUCUGGGCUUGCUGUACAUAACUCAAUAGCCGGAAGCCCUUACCCCAAAAAGCAUUUGCGGAGGGCGCACUCUUCGAGAAGACGG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AGAAGCCGGCAUAUUCU-- -| C CU GCUGUACAUAA
GCCCUUCGCGAAU CUUUUUG GGU GGGCUU \
CGGGAGGCGUUUA GAAAAAC CCA CCCGAA C
GGCAGAAGAGCUUCUCACG C^ C UU GGCCGAUAACU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Pab-Mir-129-P1_5p* |
| mirBase accession | None |
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| Sequence |
0- CUUUUUGCGGUCUGGGCUUGC -21
Get sequence
|
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| Mature sequence |
Pab-Mir-129-P1_3p |
| mirBase accession | None |
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| Sequence |
42- AAGCCCUUACCCCAAAAAGCAU -64
Get sequence
|
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