MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-129-P1d

Family name MIR-129 (all species)
Seed AGCCCUU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-129-P1c  Xla-Mir-129-P2c  Xla-Mir-129-P2d  Xla-Mir-129-P4 
Orthologues Ami-Mir-129-P1  Bta-Mir-129-P1  Cfa-Mir-129-P1  Cja-Mir-129-P1  Cpi-Mir-129-P1  Cpo-Mir-129-P1  Dno-Mir-129-P1  Eca-Mir-129-P1  Ete-Mir-129-P1  Gga-Mir-129-P1  Gja-Mir-129-P1  Hsa-Mir-129-P1  Laf-Mir-129-P1  Lch-Mir-129-P1  Loc-Mir-129-P1  Mml-Mir-129-P1  Mmr-Mir-129-P1  Mmu-Mir-129-P1  Mun-Mir-129-P1  Neu-Mir-129-P1  Oan-Mir-129-P1  Ocu-Mir-129-P1  Pab-Mir-129-P1  Pbv-Mir-129-P1  Pma-Mir-129-o1  Rno-Mir-129-P1  Sha-Mir-129-P1  Spt-Mir-129-P1  Tgu-Mir-129-P1  Xtr-Mir-129-P1 
Node of Origin (locus) X. laevis
Node of Origin (family) Chordata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030731.1: 16187756-16187820 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGGGAGCUGGAUUUUAGUCCUUCUCAAAUCUUUUUGCGGUCUGGGCUUGCUGUAUAUAAAUACCUAGCCGGGAAGCCCUUACCCCAAAAAGCAUUUGCGGAGGACGCAGUCGGCGGCGACAACG
Get precursor sequence
Structure
        10          20        30         40        50        60 
UGGGGAGCUGGAUUUUA--       U     -|      C   CU      G UGUAUAUAA 
                   GUCCUUC CAAAU CUUUUUG GGU  GGGCUU C         A
                   CAGGAGG GUUUA GAAAAAC CCA  CCCGAA G         U
GCAACAGCGGCGGCUGACG       C     C^      C   UU      G GCCGAUCCA 
   120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Eg Em Em He Ki Re St St
Star sequence

Xla-Mir-129-P1d_5p*
mirBase accessionNone
Sequence 
0- CUUUUUGCGGUCUGGGCUUGC -21
Get sequence
Mature sequence

Xla-Mir-129-P1d_3p
mirBase accessionNone
Sequence 
43- AAGCCCUUACCCCAAAAAGCAU -65
Get sequence