MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-129-P2c

Family name MIR-129 (all species)
Seed AGCCCUU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-129-P1c  Xla-Mir-129-P1d  Xla-Mir-129-P2d  Xla-Mir-129-P4 
Orthologues Aca-Mir-129-P2  Ami-Mir-129-P2  Bta-Mir-129-P2  Cfa-Mir-129-P2  Cja-Mir-129-P2  Cli-Mir-129-P2  Cmi-Mir-129-P2  Cpi-Mir-129-P2  Cpo-Mir-129-P2  Dno-Mir-129-P2  Eca-Mir-129-P2  Ete-Mir-129-P2  Gja-Mir-129-P2  Hsa-Mir-129-P2  Laf-Mir-129-P2  Lch-Mir-129-P2  Loc-Mir-129-P2  Mdo-Mir-129-P2  Mml-Mir-129-P2  Mmr-Mir-129-P2  Mmu-Mir-129-P2  Mun-Mir-129-P2  Neu-Mir-129-P2  Oan-Mir-129-P2  Ocu-Mir-129-P2  Pab-Mir-129-P2  Pbv-Mir-129-P2  Pma-Mir-129-o2  Rno-Mir-129-P2  Sha-Mir-129-P2  Spt-Mir-129-P2  Sto-Mir-129-P2  Tgu-Mir-129-P2  Xtr-Mir-129-P2 
Node of Origin (locus) X. laevis
Node of Origin (family) Chordata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030728.1: 78252977-78253042 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUAGUACCGCAAUCUCUUUCUCUCUCAAAGCUUUUUGCGGUCUGGGCUUGCUGUUCUCAAUCAAAGUAUCCAGGAAGCCCUUAUCCCAAAAAGAAUUUGCGAGGGAGGAUUUUCUUCUGACUCUCU
Get precursor sequence
Structure
        10          20        30         40         50        60  
CUAGUACCGCAAUCUCU--       U    G-|      C  UCU-      G UGUUCUCAAU 
                   UUCUCUC CAAA  CUUUUUG GG    GGGCUU C          \
                   GAGGGAG GUUU  GAAAAAC CC    CCCGAA G          C
UCUCUCAGUCUUCUUUUAG       C    AA^      -  UAUU      G ACCUAUGAAA 
    120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Em
Star sequence

Xla-Mir-129-P2c_5p*
mirBase accessionNone
Sequence 
0- CUUUUUGCGGUCUGGGCUUGC -21
Get sequence
Mature sequence

Xla-Mir-129-P2c_3p
mirBase accessionNone
Sequence 
44- AAGCCCUUAUCCCAAAAAGAAU -66
Get sequence