MirGeneDB 2.1

MirGeneDB ID

Pma-Mir-129-o2

Family name MIR-129 (all species)
Seed UUUUUGC
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues Pma-Mir-129-o1 
Orthologues Aca-Mir-129-P2  Ami-Mir-129-P2  Bta-Mir-129-P2  Cfa-Mir-129-P2  Cli-Mir-129-P2  Cmi-Mir-129-P2  Cpi-Mir-129-P2  Cpo-Mir-129-P2  Dno-Mir-129-P2  Dre-Mir-129-P2a  Dre-Mir-129-P2b  Ete-Mir-129-P2  Gja-Mir-129-P2  Gmo-Mir-129-P2a  Gmo-Mir-129-P2b  Hsa-Mir-129-P2  Lch-Mir-129-P2  Loc-Mir-129-P2  Mal-Mir-129-P2a  Mal-Mir-129-P2b  Mdo-Mir-129-P2  Mml-Mir-129-P2  Mmu-Mir-129-P2  Mun-Mir-129-P2  Oan-Mir-129-P2  Ocu-Mir-129-P2  Pbv-Mir-129-P2  Rno-Mir-129-P2  Sha-Mir-129-P2  Spt-Mir-129-P2  Sto-Mir-129-P2  Tgu-Mir-129-P2  Tni-Mir-129-P2a  Tni-Mir-129-P2b  Xla-Mir-129-P2c  Xla-Mir-129-P2d  Xtr-Mir-129-P2 
Node of Origin (locus) P. marinus
Node of Origin (family) Chordata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NW_022639030.1: 84343-84414 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGCUCCGGUCUCCAUGGUGGCGCGCCGCUCUUUUUGCGGUGUGGGCUUUCUGUGGCGCAGCGCGCCUCUCCCUCUCGGAAAGCCCUUACCCCAAAAAGCAUCGGCGCGUGGCACGAACAACGACAGCCGUC
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Structure
        10          20        30         40        50        60     
CUGCUCCGGUCUCCAUG--  G        CU-|      C    U         GUGGCGCAGCGC 
                   GU GCGCGCCG   CUUUUUG GGUG GGGCUUUCU            \
                   CG UGCGCGGC   GAAAAAC CCAU CCCGAAAGG            G
CUGCCGACAGCAACAAGCA  G        UAC^      C    U         CUCUCCCUCUCC 
130       120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-129-o2_5p

mirBase accessionNone
Sequence
0- CUUUUUGCGGUGUGGGCUUUCU -22
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Star sequence

Pma-Mir-129-o2_3p*

mirBase accessionNone
Sequence
50- AAGCCCUUACCCCAAAAAGCAU -72
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