MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-129-P2

Family name MIR-129 (all species)
Seed UUUUUGC
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID sha-mir-129
Paralogues Sha-Mir-129-P1 
Orthologues Aca-Mir-129-P2  Ami-Mir-129-P2  Bta-Mir-129-P2  Cfa-Mir-129-P2  Cja-Mir-129-P2  Cli-Mir-129-P2  Cmi-Mir-129-P2  Cpi-Mir-129-P2  Cpo-Mir-129-P2  Dno-Mir-129-P2  Dre-Mir-129-P2a  Dre-Mir-129-P2b  Eca-Mir-129-P2  Ete-Mir-129-P2  Gja-Mir-129-P2  Gmo-Mir-129-P2a  Gmo-Mir-129-P2b  Hsa-Mir-129-P2  Laf-Mir-129-P2  Lch-Mir-129-P2  Loc-Mir-129-P2  Mal-Mir-129-P2a  Mal-Mir-129-P2b  Mdo-Mir-129-P2  Mml-Mir-129-P2  Mmr-Mir-129-P2  Mmu-Mir-129-P2  Mun-Mir-129-P2  Neu-Mir-129-P2  Oan-Mir-129-P2  Ocu-Mir-129-P2  Pab-Mir-129-P2  Pbv-Mir-129-P2  Pma-Mir-129-o2  Rno-Mir-129-P2  Spt-Mir-129-P2  Sto-Mir-129-P2  Tgu-Mir-129-P2  Tni-Mir-129-P2a  Tni-Mir-129-P2b  Xla-Mir-129-P2c  Xla-Mir-129-P2d  Xtr-Mir-129-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(DEVIL_add)		 GL861653.1: 2316551-2316613 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUCCUACCUGGCCUCUGCCUCCUUUGGAUCUUUUUGCGGUCUGGGCUUGCUGUUCUAAUCAAUAGUCAGGAAGCCCUUACCCCAAAAAGUAUCUACAGGGGGCCCUGUCAACGGGAGUGACU
Get precursor sequence
Structure
        10          20        30         40        50        60
UCUCCUACCUGGCCUCU--       U     -|      C   CU      G UGUUCUAA 
                   GCCUCCU UGGAU CUUUUUG GGU  GGGCUU C        U
                   CGGGGGA AUCUA GAAAAAC CCA  CCCGAA G        C
UCAGUGAGGGCAACUGUCC       C     U^      C   UU      G ACUGAUAA 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-129-P2_5p
mirBase accessionMIMAT0022827
Sequence 
0- CUUUUUGCGGUCUGGGCUUGC -21
Get sequence
Star sequence

Sha-Mir-129-P2_3p*
mirBase accessionNone
Sequence 
41- AAGCCCUUACCCCAAAAAGUAU -63
Get sequence