| MirGeneDB ID | Spt-Mir-129-P2 |
|---|---|
| Family name | MIR-129 (all species) |
| Seed | UUUUUGC |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-129-P1 Spt-Mir-129-P4 |
| Orthologues | Aca-Mir-129-P2 Ami-Mir-129-P2 Bta-Mir-129-P2 Cfa-Mir-129-P2 Cja-Mir-129-P2 Cli-Mir-129-P2 Cmi-Mir-129-P2 Cpi-Mir-129-P2 Cpo-Mir-129-P2 Dno-Mir-129-P2 Dre-Mir-129-P2a Dre-Mir-129-P2b Eca-Mir-129-P2 Ete-Mir-129-P2 Gja-Mir-129-P2 Gmo-Mir-129-P2a Gmo-Mir-129-P2b Hsa-Mir-129-P2 Laf-Mir-129-P2 Lch-Mir-129-P2 Loc-Mir-129-P2 Mal-Mir-129-P2a Mal-Mir-129-P2b Mdo-Mir-129-P2 Mml-Mir-129-P2 Mmr-Mir-129-P2 Mmu-Mir-129-P2 Mun-Mir-129-P2 Neu-Mir-129-P2 Oan-Mir-129-P2 Ocu-Mir-129-P2 Pab-Mir-129-P2 Pbv-Mir-129-P2 Pma-Mir-129-o2 Rno-Mir-129-P2 Sha-Mir-129-P2 Sto-Mir-129-P2 Tgu-Mir-129-P2 Tni-Mir-129-P2a Tni-Mir-129-P2b Xla-Mir-129-P2c Xla-Mir-129-P2d Xtr-Mir-129-P2 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Chordata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01015000.1: 553675-553740 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CAGCGCGGCGAUUCUCUUUCUCUCUCGGAUCUUUUUGCGGUCUGGGCUUGCUGUUCCUCCAAUCAGUAGUCAGGAAGCCCUUACCCCAAAAAGUAUUUGCGAGGGAUAAAGUCAGCAGUGGGGAGAGet precursor sequence |
| Structure | 10 20 30 40 50 60 CAGCGCGGCGAUUCUCUU-- U -| C CU G UGUUCCUCCA UCUCUC CGGAU CUUUUUG GGU GGGCUU C \ AGGGAG GUUUA GAAAAAC CCA CCCGAA G A AGAGGGGUGACGACUGAAAU C U^ C UU G ACUGAUGACU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Spt-Mir-129-P2_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- CUUUUUGCGGUCUGGGCUUGC -21
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|
| Star sequence | Spt-Mir-129-P2_3p* (predicted) |
| mirBase accession | None |
| Sequence |
44- AAGCCCUUACCCCAAAAAGUAU -66
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|
