| MirGeneDB ID | Spt-Mir-129-P1 |
|---|---|
| Family name | MIR-129 (all species) |
| Seed | UUUUUGC |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-129-P2 Spt-Mir-129-P4 |
| Orthologues | Ami-Mir-129-P1 Bta-Mir-129-P1 Cfa-Mir-129-P1 Cja-Mir-129-P1 Cpi-Mir-129-P1 Cpo-Mir-129-P1 Dno-Mir-129-P1 Dre-Mir-129-P1a Dre-Mir-129-P1b Eca-Mir-129-P1 Ete-Mir-129-P1 Gga-Mir-129-P1 Gja-Mir-129-P1 Gmo-Mir-129-P1a Gmo-Mir-129-P1b Hsa-Mir-129-P1 Laf-Mir-129-P1 Lch-Mir-129-P1 Loc-Mir-129-P1 Mal-Mir-129-P1a Mal-Mir-129-P1b Mml-Mir-129-P1 Mmr-Mir-129-P1 Mmu-Mir-129-P1 Mun-Mir-129-P1 Neu-Mir-129-P1 Oan-Mir-129-P1 Ocu-Mir-129-P1 Pab-Mir-129-P1 Pbv-Mir-129-P1 Pma-Mir-129-o1 Rno-Mir-129-P1 Sha-Mir-129-P1 Tgu-Mir-129-P1 Tni-Mir-129-P1a Tni-Mir-129-P1b Xla-Mir-129-P1c Xla-Mir-129-P1d Xtr-Mir-129-P1 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Chordata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01006018.1: 503659-503723 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AAGCCGCAGGAGACUUUGUCCUUCGCGAAUCUUUUUGCGGUCUGGGCUUGCUGUAUAUAACUACCUAGCCGGGAAGCCCUUACCCCAAAAAGCAUUCGCGGAGUGCGCAUUCGCCGAAGGAGCAGGet precursor sequence |
| Structure | 10 20 30 40 50 60 AAGCCGCAGGAGACUUU-- UC -| C CU G UGUAUAUAA G CUUCGCGAAU CUUUUUG GGU GGGCUU C C C GAGGCGCUUA GAAAAAC CCA CCCGAA G U GACGAGGAAGCCGCUUACG GU C^ C UU G GCCGAUCCA 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Spt-Mir-129-P1_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- CUUUUUGCGGUCUGGGCUUGC -21
Get sequence
|
| Star sequence | Spt-Mir-129-P1_3p* (predicted) |
| mirBase accession | None |
| Sequence |
43- AAGCCCUUACCCCAAAAAGCAU -65
Get sequence
|
