MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-129-P1

Family name MIR-129 (all species)
Seed UUUUUGC
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-129-2
Paralogues Cfa-Mir-129-P2 
Orthologues Ami-Mir-129-P1  Bta-Mir-129-P1  Cja-Mir-129-P1  Cpi-Mir-129-P1  Cpo-Mir-129-P1  Dno-Mir-129-P1  Dre-Mir-129-P1a  Dre-Mir-129-P1b  Eca-Mir-129-P1  Ete-Mir-129-P1  Gga-Mir-129-P1  Gja-Mir-129-P1  Gmo-Mir-129-P1a  Gmo-Mir-129-P1b  Hsa-Mir-129-P1  Laf-Mir-129-P1  Lch-Mir-129-P1  Loc-Mir-129-P1  Mal-Mir-129-P1a  Mal-Mir-129-P1b  Mml-Mir-129-P1  Mmr-Mir-129-P1  Mmu-Mir-129-P1  Mun-Mir-129-P1  Neu-Mir-129-P1  Oan-Mir-129-P1  Ocu-Mir-129-P1  Pab-Mir-129-P1  Pbv-Mir-129-P1  Pma-Mir-129-o1  Rno-Mir-129-P1  Sha-Mir-129-P1  Spt-Mir-129-P1  Tgu-Mir-129-P1  Tni-Mir-129-P1a  Tni-Mir-129-P1b  Xla-Mir-129-P1c  Xla-Mir-129-P1d  Xtr-Mir-129-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(canFam3_add)		 chr18: 26154533-26154596 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGACGCCGGCAGACUCUGCCCUUCGCGAAUCUUUUUGCGGUCUGGGCUUGCUGUACAUAACUCGAUAGCCGGAAGCCCUUACCCCAAAAAGCAUUCGCGGAGGGCGCGCUCGUCGAGAGGACGG
Get precursor sequence
Structure
        10          20        30         40        50        60 
AGACGCCGGCAGACUCU--             -|      C   CU      GCUGUACAUAA 
                   GCCCUUCGCGAAU CUUUUUG GGU  GGGCUU           \
                   CGGGAGGCGCUUA GAAAAAC CCA  CCCGAA           C
GGCAGGAGAGCUGCUCGCG             C^      C   UU      GGCCGAUAGCU 
  120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-129-P1_5p
mirBase accessionMIMAT0006623
Sequence 
0- CUUUUUGCGGUCUGGGCUUGC -21
Get sequence
Proposed targets TargetScanVert: cfa-miR-129
miRDB: MIMAT0006623
Star sequence

Cfa-Mir-129-P1_3p*
mirBase accessionNone
Sequence 
42- AAGCCCUUACCCCAAAAAGCAU -64
Get sequence