MirGeneDB ID | Gmo-Mir-129-P2a |
Family name |
MIR-129 (all species) |
Seed |
AGCCCUU |
Species |
Cod (Gadus morhua) |
MiRBase ID |
gmo-mir-129-4
|
Paralogues |
Gmo-Mir-129-P1a
Gmo-Mir-129-P1b
Gmo-Mir-129-P2b
|
Orthologues |
Aca-Mir-129-P2
Ami-Mir-129-P2
Bta-Mir-129-P2
Cfa-Mir-129-P2
Cja-Mir-129-P2
Cli-Mir-129-P2
Cmi-Mir-129-P2
Cpi-Mir-129-P2
Cpo-Mir-129-P2
Dno-Mir-129-P2
Dre-Mir-129-P2a
Eca-Mir-129-P2
Ete-Mir-129-P2
Gja-Mir-129-P2
Hsa-Mir-129-P2
Laf-Mir-129-P2
Lch-Mir-129-P2
Loc-Mir-129-P2
Mal-Mir-129-P2a
Mdo-Mir-129-P2
Mml-Mir-129-P2
Mmr-Mir-129-P2
Mmu-Mir-129-P2
Mun-Mir-129-P2
Neu-Mir-129-P2
Oan-Mir-129-P2
Ocu-Mir-129-P2
Pab-Mir-129-P2
Pbv-Mir-129-P2
Pma-Mir-129-o2
Rno-Mir-129-P2
Sha-Mir-129-P2
Spt-Mir-129-P2
Sto-Mir-129-P2
Tgu-Mir-129-P2
Tni-Mir-129-P2a
Xtr-Mir-129-P2
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Chordata
|
Genome context (Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_2432: 95798-95859 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGUCCGGCUCUCCUCUUGUCCUCUUCGGGACUUUUUGCGGUCUGGGCUUGCUGUCCAAUCACUAUCCAGGAAGCCCUUACCCCAAAAAGCAUCUGCAGGGGACAGCUGCAUCAGGAUGGAAG
Get precursor sequence
|
Structure | 10 20 30 40 50
GGUCCGGCUCUCCUCUU-- U A-| C CU G UGUCCAAU
GUCCUCU CGGG CUUUUUG GGU GGGCUU C \
CAGGGGA GUCU GAAAAAC CCA CCCGAA G C
GAAGGUAGGACUACGUCGA C AC^ C UU G ACCUAUCA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Gmo-Mir-129-P2a_5p* |
mirBase accession | MIMAT0044191 |
Sequence |
0- CUUUUUGCGGUCUGGGCUUGC -21
Get sequence
|
Mature sequence |
Gmo-Mir-129-P2a_3p |
mirBase accession | MIMAT0044075 |
Sequence |
40- AAGCCCUUACCCCAAAAAGCAU -62
Get sequence
|