MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-129-P2a

Family name MIR-129 (all species)
Seed AGCCCUU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-129-4
Paralogues Gmo-Mir-129-P1a  Gmo-Mir-129-P1b  Gmo-Mir-129-P2b 
Orthologues Aca-Mir-129-P2  Ami-Mir-129-P2  Bta-Mir-129-P2  Cfa-Mir-129-P2  Cja-Mir-129-P2  Cli-Mir-129-P2  Cmi-Mir-129-P2  Cpi-Mir-129-P2  Cpo-Mir-129-P2  Dno-Mir-129-P2  Dre-Mir-129-P2a  Eca-Mir-129-P2  Ete-Mir-129-P2  Gja-Mir-129-P2  Hsa-Mir-129-P2  Laf-Mir-129-P2  Lch-Mir-129-P2  Loc-Mir-129-P2  Mal-Mir-129-P2a  Mdo-Mir-129-P2  Mml-Mir-129-P2  Mmr-Mir-129-P2  Mmu-Mir-129-P2  Mun-Mir-129-P2  Neu-Mir-129-P2  Oan-Mir-129-P2  Ocu-Mir-129-P2  Pab-Mir-129-P2  Pbv-Mir-129-P2  Pma-Mir-129-o2  Rno-Mir-129-P2  Sha-Mir-129-P2  Spt-Mir-129-P2  Sto-Mir-129-P2  Tgu-Mir-129-P2  Tni-Mir-129-P2a  Xtr-Mir-129-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Chordata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_2432: 95798-95859 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGUCCGGCUCUCCUCUUGUCCUCUUCGGGACUUUUUGCGGUCUGGGCUUGCUGUCCAAUCACUAUCCAGGAAGCCCUUACCCCAAAAAGCAUCUGCAGGGGACAGCUGCAUCAGGAUGGAAG
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Structure
        10          20        30         40        50          
GGUCCGGCUCUCCUCUU--       U    A-|      C   CU      G UGUCCAAU 
                   GUCCUCU CGGG  CUUUUUG GGU  GGGCUU C        \
                   CAGGGGA GUCU  GAAAAAC CCA  CCCGAA G        C
GAAGGUAGGACUACGUCGA       C    AC^      C   UU      G ACCUAUCA 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-129-P2a_5p*

mirBase accessionMIMAT0044191
Sequence
0- CUUUUUGCGGUCUGGGCUUGC -21
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Mature sequence

Gmo-Mir-129-P2a_3p

mirBase accessionMIMAT0044075
Sequence
40- AAGCCCUUACCCCAAAAAGCAU -62
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