MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-129-P2

Family name MIR-129 (all species)
Seed UUUUUGC
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-129a
Paralogues Ami-Mir-129-P1  Ami-Mir-129-P4 
Orthologues Aca-Mir-129-P2  Bta-Mir-129-P2  Cfa-Mir-129-P2  Cja-Mir-129-P2  Cli-Mir-129-P2  Cmi-Mir-129-P2  Cpi-Mir-129-P2  Cpo-Mir-129-P2  Dno-Mir-129-P2  Dre-Mir-129-P2a  Dre-Mir-129-P2b  Eca-Mir-129-P2  Ete-Mir-129-P2  Gja-Mir-129-P2  Gmo-Mir-129-P2a  Gmo-Mir-129-P2b  Hsa-Mir-129-P2  Laf-Mir-129-P2  Lch-Mir-129-P2  Loc-Mir-129-P2  Mal-Mir-129-P2a  Mal-Mir-129-P2b  Mdo-Mir-129-P2  Mml-Mir-129-P2  Mmr-Mir-129-P2  Mmu-Mir-129-P2  Mun-Mir-129-P2  Neu-Mir-129-P2  Oan-Mir-129-P2  Ocu-Mir-129-P2  Pab-Mir-129-P2  Pbv-Mir-129-P2  Pma-Mir-129-o2  Rno-Mir-129-P2  Sha-Mir-129-P2  Spt-Mir-129-P2  Sto-Mir-129-P2  Tgu-Mir-129-P2  Tni-Mir-129-P2a  Tni-Mir-129-P2b  Xla-Mir-129-P2c  Xla-Mir-129-P2d  Xtr-Mir-129-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017712967.1: 69417-69482 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CUUUUUGCGGUCUGGGCUUGCUGUUCCUCCAACCCACACUCAGGAAGCCCUUACCCCAAAAAGUAU
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Structure
           10        20        30  
---|      C   CU      G   UUCCUCCA 
   CUUUUUG GGU  GGGCUU CUG        \
   GAAAAAC CCA  CCCGAA GAC        A
UAU^      C   UU      G   UCACACCC 
     60        50        40
Deep sequencing
CommentThe precursor sequence is located near the end of an unplaced scaffold and hence the extended precursor sequence is not currently available.
3' NTU Unknown
MotifsUGUG in loop
Mature sequence

Ami-Mir-129-P2_5p
mirBase accessionMIMAT0038136
Sequence 
0- CUUUUUGCGGUCUGGGCUUGC -21
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Star sequence

Ami-Mir-129-P2_3p*
mirBase accessionMIMAT0038137
Sequence 
44- AAGCCCUUACCCCAAAAAGUAU -66
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