MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-129-P2

Family name MIR-129 (all species)
Seed UUUUUGC
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-129-P4 
Orthologues Aca-Mir-129-P2  Ami-Mir-129-P2  Bta-Mir-129-P2  Cfa-Mir-129-P2  Cja-Mir-129-P2  Cli-Mir-129-P2  Cmi-Mir-129-P2  Cpi-Mir-129-P2  Cpo-Mir-129-P2  Dno-Mir-129-P2  Dre-Mir-129-P2a  Dre-Mir-129-P2b  Eca-Mir-129-P2  Ete-Mir-129-P2  Gja-Mir-129-P2  Gmo-Mir-129-P2a  Gmo-Mir-129-P2b  Hsa-Mir-129-P2  Laf-Mir-129-P2  Lch-Mir-129-P2  Loc-Mir-129-P2  Mal-Mir-129-P2a  Mal-Mir-129-P2b  Mdo-Mir-129-P2  Mml-Mir-129-P2  Mmr-Mir-129-P2  Mmu-Mir-129-P2  Mun-Mir-129-P2  Neu-Mir-129-P2  Oan-Mir-129-P2  Ocu-Mir-129-P2  Pab-Mir-129-P2  Pbv-Mir-129-P2  Pma-Mir-129-o2  Rno-Mir-129-P2  Sha-Mir-129-P2  Spt-Mir-129-P2  Tgu-Mir-129-P2  Tni-Mir-129-P2a  Tni-Mir-129-P2b  Xla-Mir-129-P2c  Xla-Mir-129-P2d  Xtr-Mir-129-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(GCA_003427355_STO_add)		 BFAA01002638.1: 149739-149804 [+]
Precursor
(pre-Mir +30nt flank)
UUAAAUCUUCUCAAGUUUUCUCUCUUGAAUCUUUUUGCGGUCUGGGCUUGCUGUUCCUUUGUCUGACAAUCAGGAAGCCCUUACCCCAAAAAGUAUUUGCGUGGGAUACAGUCUGCGAAGGGGGCA
Get precursor sequence
Structure
        10          20        30         40        50        60  
UUAAAUCUUCUCAAGUUU--    UCU     -|      C   CU      G UGUUCCUUUG 
                    UCUC   UGAAU CUUUUUG GGU  GGGCUU C          \
                    AGGG   GUUUA GAAAAAC CCA  CCCGAA G          U
ACGGGGGAAGCGUCUGACAU    UGC     U^      C   UU      G ACUAACAGUC 
    120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Sto-Mir-129-P2_5p
mirBase accessionNone
Sequence 
0- CUUUUUGCGGUCUGGGCUUGC -21
Get sequence
Star sequence

Sto-Mir-129-P2_3p*
mirBase accessionNone
Sequence 
44- AAGCCCUUACCCCAAAAAGUAU -66
Get sequence