MirGeneDB 3.0
MirGeneDB ID

Aca-Mir-221-P1c

Family name MIR-221 (all species)
Seed GCUACAU
Species Green anole lizard (Anolis carolinensis)
MiRBase ID
Paralogues Aca-Mir-221-P1a  Aca-Mir-221-P2a 
Orthologues Ami-Mir-221-P1c  Cli-Mir-221-P1c  Cmi-Mir-221-P1c  Cpi-Mir-221-P1c  Dre-Mir-221-P1c  Gga-Mir-221-P1c  Gja-Mir-221-P1c  Lch-Mir-221-P1c  Loc-Mir-221-P1c  Mun-Mir-221-P1c  Oan-Mir-221-P1c  Pbv-Mir-221-P1c  Spt-Mir-221-P1c  Sto-Mir-221-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(anoCar2)		 GL343528.1: 405279-405342 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGACUCCUUGGGAUUGGAUGCCAAUGGGCUGCUCAGUAGUCGGUGUAGAAUCUGUCUGAUGAUACCCACAGCUACAUCUGAUUACUGGGUUUCCUGUGGCAUCAGGAAUCUGCGAUCGCCGAU
Get precursor sequence
Structure
        10           20        30        40         50        60 
AGGACUCCUUGGGAUUG---|      A    CU             -     AAUCUGUCUGA 
                    GAUGCCA UGGG  GCUCAGUAGUCGG UGUAG           \
                    CUACGGU GUCC  UGGGUCAUUAGUC ACAUC           U
UAGCCGCUAGCGUCUAAGGA^      -    UU             U     GACACCCAUAG 
  120       110       100         90        80        70
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Sk Ta Ta To Wh
Star sequence

Aca-Mir-221-P1c_5p*
mirBase accessionNone
Sequence 
0- UGCUCAGUAGUCGGUGUAGAAUC -23
Get sequence
Mature sequence

Aca-Mir-221-P1c_3p
mirBase accessionNone
Sequence 
40- AGCUACAUCUGAUUACUGGGUUUC -64
Get sequence