MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-221-P1c

Family name MIR-221 (all species)
Seed GCUACAU
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-222b
Paralogues Cpi-Mir-221-P1a  Cpi-Mir-221-P2a 
Orthologues Aca-Mir-221-P1c  Ami-Mir-221-P1c  Cli-Mir-221-P1c  Cmi-Mir-221-P1c  Dre-Mir-221-P1c  Gga-Mir-221-P1c  Gja-Mir-221-P1c  Lch-Mir-221-P1c  Loc-Mir-221-P1c  Mun-Mir-221-P1c  Oan-Mir-221-P1c  Pbv-Mir-221-P1c  Spt-Mir-221-P1c  Sto-Mir-221-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)		 JH584724: 419807-419873 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGAAGCAGGAGAACCUAGAUGCAAUUGGCUGCUCAGUAGUCGGUGUAGGAUCUGUCUGACAUUAUUACCAACAGCUACAUCUGAUUACUGGGUCACUGAUAGCAUCAUCAAACUGCAGCCAACUGG
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Structure
        10          20        30        40         50        60  
GAGAAGCAGGAGAACCUA--     A  UG CU             -|    GAUCUGUCUGAC 
                    GAUGC AU  G  GCUCAGUAGUCGG UGUAG            A
                    CUACG UA  C  UGGGUCAUUAGUC ACAUC            U
GGUCAACCGACGUCAAACUA     A  GU AC             U^    GACAACCAUUAU 
     120       110       100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Te Te Te To
Star sequence

Cpi-Mir-221-P1c_5p*
mirBase accessionMIMAT0037854
Sequence 
0- UGCUCAGUAGUCGGUGUAGGAUC -23
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Mature sequence

Cpi-Mir-221-P1c_3p
mirBase accessionMIMAT0037855
Sequence 
43- AGCUACAUCUGAUUACUGGGUCAC -67
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