MirGeneDB 3.0

MirGeneDB ID

Loc-Mir-221-P1c

Family name MIR-221 (all species)
Seed CUCAGUA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-221-P1a  Loc-Mir-221-P2a 
Orthologues Aca-Mir-221-P1c  Ami-Mir-221-P1c  Cli-Mir-221-P1c  Cmi-Mir-221-P1c  Cpi-Mir-221-P1c  Dre-Mir-221-P1c  Gga-Mir-221-P1c  Gja-Mir-221-P1c  Lch-Mir-221-P1c  Mun-Mir-221-P1c  Oan-Mir-221-P1c  Pbv-Mir-221-P1c  Spt-Mir-221-P1c  Sto-Mir-221-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)
LG7: 22704992-22705054 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GAUCCAGAUGAUCUGUGAUGUCCAUUGCUAGCUCAGUAUUCAGUGUAGAGUCUGUGUGAUAUUCAUACACAGCUACAUCUGAUUACUGGGUCAAUAAUGACAUCAUAAGCAACCUCUAAAGAC
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Structure
        10           20        30        40         50        60
GAUCCAGAUGAUCUGUG---|    C    CUA        U    -     AGUCUGUGUGA 
                    AUGUC AUUG   GCUCAGUA UCAG UGUAG           U
                    UACAG UAAU   UGGGUCAU AGUC ACAUC           A
CAGAAAUCUCCAACGAAUAC^    -    AAC        U    U     GACACAUACUU 
 120       110       100         90        80        70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-221-P1c_5p

mirBase accessionNone
Sequence
0- GCUCAGUAUUCAGUGUAGAGUCU -23
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Co-mature sequence

Loc-Mir-221-P1c_3p

mirBase accessionNone
Sequence
40- AGCUACAUCUGAUUACUGGGUCA -63
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