MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-221-P1a

Family name MIR-221 (all species)
Seed GCUACAU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-221-P1c  Loc-Mir-221-P2a 
Orthologues Aca-Mir-221-P1a  Ami-Mir-221-P1a  Bta-Mir-221-P1a  Cfa-Mir-221-P1a  Cja-Mir-221-P1a1  Cja-Mir-221-P1a2  Cli-Mir-221-P1a  Cmi-Mir-221-P1a  Cpi-Mir-221-P1a  Cpo-Mir-221-P1a  Dno-Mir-221-P1a  Dre-Mir-221-P1a1  Eca-Mir-221-P1a  Ete-Mir-221-P1a  Gga-Mir-221-P1a  Gja-Mir-221-P1a  Gmo-Mir-221-P1a1  Gmo-Mir-221-P1a2  Hsa-Mir-221-P1a  Laf-Mir-221-P1a  Lch-Mir-221-P1a  Mal-Mir-221-P1a1  Mal-Mir-221-P1a2  Mdo-Mir-221-P1a  Mml-Mir-221-P1a  Mmr-Mir-221-P1a  Mmu-Mir-221-P1a  Mun-Mir-221-P1a  Neu-Mir-221-P1a  Oan-Mir-221-P1a  Ocu-Mir-221-P1a  Pab-Mir-221-P1a  Pbv-Mir-221-P1a  Rno-Mir-221-P1a  Sha-Mir-221-P1a  Spt-Mir-221-P1a  Sto-Mir-221-P1a  Tgu-Mir-221-P1a  Tni-Mir-221-P1a1  Xla-Mir-221-P1a3  Xla-Mir-221-P1a4  Xtr-Mir-221-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG17: 1032091-1032152 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUAAGAUGUAGAAUAGCAAUGCUCAUGAGGUGCUCAGUAGUCAGUGUAGAUCCUGUAUUCUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUGAUGGCAUUUUCCACUUCCUGUUGGCACA
Get precursor sequence
Structure
        10           20        30        40         50          
UUAAGAUGUAGAAUAGC---|    U   G  GU             -     AUCCUGUAUU 
                    AAUGC CAU AG  GCUCAGUAGUCAG UGUAG          \
                    UUACG GUA UC  UGGGUCAUCGGUC ACAUC          C
ACACGGUUGUCCUUCACCUU^    -   G  UC             U     GACGACUAAU 
120       110       100         90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-221-P1a_5p*
mirBase accessionNone
Sequence 
0- UGCUCAGUAGUCAGUGUAGAUCC -23
Get sequence
Mature sequence

Loc-Mir-221-P1a_3p
mirBase accessionNone
Sequence 
38- AGCUACAUCUGGCUACUGGGUCUC -62
Get sequence