MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-221-P1a1

Family name MIR-221 (all species)
Seed GCUACAU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-221-P1a2  Cja-Mir-221-P2a 
Orthologues Aca-Mir-221-P1a  Ami-Mir-221-P1a  Bta-Mir-221-P1a  Cfa-Mir-221-P1a  Cli-Mir-221-P1a  Cmi-Mir-221-P1a  Cpi-Mir-221-P1a  Cpo-Mir-221-P1a  Dno-Mir-221-P1a  Dre-Mir-221-P1a1  Eca-Mir-221-P1a  Ete-Mir-221-P1a  Gga-Mir-221-P1a  Gja-Mir-221-P1a  Gmo-Mir-221-P1a1  Hsa-Mir-221-P1a  Laf-Mir-221-P1a  Lch-Mir-221-P1a  Loc-Mir-221-P1a  Mal-Mir-221-P1a1  Mdo-Mir-221-P1a  Mml-Mir-221-P1a  Mmr-Mir-221-P1a  Mmu-Mir-221-P1a  Mun-Mir-221-P1a  Neu-Mir-221-P1a  Oan-Mir-221-P1a  Ocu-Mir-221-P1a  Pab-Mir-221-P1a  Pbv-Mir-221-P1a  Rno-Mir-221-P1a  Sha-Mir-221-P1a  Spt-Mir-221-P1a  Sto-Mir-221-P1a  Tgu-Mir-221-P1a  Tni-Mir-221-P1a1  Xtr-Mir-221-P1a 
Node of Origin (locus) C. jacchus
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021937.1: 45130695-45130758 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGCUGCCAGAAGGUGUGGGUACCCUCAAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUGAUGGCAUCUUUUAGCUUCUGCUUCAGUG
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Structure
        10          20        30        40         50        60 
CAGCUGCCAGAAGGUGU--    A  C   AU              -|    AUCCUGUCUUU 
                   GGGU CC UCA  GGCUCAGUAGCCAG UGUAG           \
                   UCUA GG AGU  CUGGGUCAUCGGUC ACAUC           U
GUGACUUCGUCUUCGAUUU    C  U   CU              U^    GAUGACUAAUG 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Cja-Mir-221-P1a1_5p* (predicted)
mirBase accessionNone
Sequence 
0- GGCUCAGUAGCCAGUGUAGAUCC -23
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Mature sequence

Cja-Mir-221-P1a1_3p
mirBase accessionNone
Sequence 
40- AGCUACAUCUGGCUACUGGGUCUC -64
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