MirGeneDB ID | Cja-Mir-221-P1a1 |
---|---|
Family name | MIR-221 (all species) |
Seed | GCUACAU |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | Cja-Mir-221-P1a2 Cja-Mir-221-P2a |
Orthologues | Aca-Mir-221-P1a Ami-Mir-221-P1a Bta-Mir-221-P1a Cfa-Mir-221-P1a Cli-Mir-221-P1a Cmi-Mir-221-P1a Cpi-Mir-221-P1a Cpo-Mir-221-P1a Dno-Mir-221-P1a Dre-Mir-221-P1a1 Eca-Mir-221-P1a Ete-Mir-221-P1a Gga-Mir-221-P1a Gja-Mir-221-P1a Gmo-Mir-221-P1a1 Hsa-Mir-221-P1a Laf-Mir-221-P1a Lch-Mir-221-P1a Loc-Mir-221-P1a Mal-Mir-221-P1a1 Mdo-Mir-221-P1a Mml-Mir-221-P1a Mmr-Mir-221-P1a Mmu-Mir-221-P1a Mun-Mir-221-P1a Neu-Mir-221-P1a Oan-Mir-221-P1a Ocu-Mir-221-P1a Pab-Mir-221-P1a Pbv-Mir-221-P1a Rno-Mir-221-P1a Sha-Mir-221-P1a Spt-Mir-221-P1a Sto-Mir-221-P1a Tgu-Mir-221-P1a Tni-Mir-221-P1a1 Xtr-Mir-221-P1a |
Node of Origin (locus) | C. jacchus |
Node of Origin (family) | Vertebrata |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 45130695-45130758 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CAGCUGCCAGAAGGUGUGGGUACCCUCAAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUGAUGGCAUCUUUUAGCUUCUGCUUCAGUGGet precursor sequence |
Structure | 10 20 30 40 50 60 CAGCUGCCAGAAGGUGU-- A C AU -| AUCCUGUCUUU GGGU CC UCA GGCUCAGUAGCCAG UGUAG \ UCUA GG AGU CUGGGUCAUCGGUC ACAUC U GUGACUUCGUCUUCGAUUU C U CU U^ GAUGACUAAUG 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Star sequence | Cja-Mir-221-P1a1_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GGCUCAGUAGCCAGUGUAGAUCC -23
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|
Mature sequence | Cja-Mir-221-P1a1_3p |
mirBase accession | None |
Sequence |
40- AGCUACAUCUGGCUACUGGGUCUC -64
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|