Mir-221-P1a

MirGeneDB ID

Neu-Mir-221-P1a

Family name

MIR-221 (all species)

Seed

GCUACAU

Species

Tammar Wallaby (Notamacropus eugenii)

MiRBase ID

Paralogues

Neu-Mir-221-P2a

Orthologues

Aca-Mir-221-P1a Ami-Mir-221-P1a Bta-Mir-221-P1a Cfa-Mir-221-P1a Cja-Mir-221-P1a1 Cja-Mir-221-P1a2 Cli-Mir-221-P1a Cmi-Mir-221-P1a Cpi-Mir-221-P1a Cpo-Mir-221-P1a Dno-Mir-221-P1a Dre-Mir-221-P1a1 Eca-Mir-221-P1a Ete-Mir-221-P1a Gga-Mir-221-P1a Gja-Mir-221-P1a Gmo-Mir-221-P1a1 Gmo-Mir-221-P1a2 Hsa-Mir-221-P1a Laf-Mir-221-P1a Lch-Mir-221-P1a Loc-Mir-221-P1a Mal-Mir-221-P1a1 Mal-Mir-221-P1a2 Mdo-Mir-221-P1a Mml-Mir-221-P1a Mmr-Mir-221-P1a Mmu-Mir-221-P1a Mun-Mir-221-P1a Oan-Mir-221-P1a Ocu-Mir-221-P1a Pab-Mir-221-P1a Pbv-Mir-221-P1a Rno-Mir-221-P1a Sha-Mir-221-P1a Spt-Mir-221-P1a Sto-Mir-221-P1a Tgu-Mir-221-P1a Tni-Mir-221-P1a1 Xla-Mir-221-P1a3 Xla-Mir-221-P1a4 Xtr-Mir-221-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_028372415.1_mMacEug1.pri)

CM051817.1: 428724590-428724651 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGGCCCCUUCUGCCUGUUUUGUCCCUCAUUCGCUCAGUAGUCAGUGUAGAUCCUGUCUCUGAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUGAUGGCAUUUUAGAGCUUCUGUCCCAAUC

Get precursor sequence

Structure

        10           20        30        40         50          
CGGCCCCUUCUGCCUGUUU---| U  C   UUC             -     AUCCUGUCUC 
                      UG CC UCA   GCUCAGUAGUCAG UGUAG          \
                      AC GG AGU   UGGGUCAUCGGUC ACAUC          U
CUAACCCUGUCUUCGAGAUUUU^ -  U   CUC             U     GACGACUAAG 
120       110       100         90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Ce	Fi	Li	Mi	Mi	Mi	Mi	Mi	Ov	Se	Se	Te	Te	Te

Star sequence

Neu-Mir-221-P1a_5p*

mirBase accession

None

Sequence

0- CGCUCAGUAGUCAGUGUAGAUCC -23

Get sequence

Mature sequence

Neu-Mir-221-P1a_3p

mirBase accession

None

Sequence

38- AGCUACAUCUGGCUACUGGGUCUC -62

Get sequence