MirGeneDB 3.0

MirGeneDB ID

Xtr-Mir-221-P1a

Family name MIR-221 (all species)
Seed GCUACAU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-222
Paralogues Xtr-Mir-221-P2a 
Orthologues Aca-Mir-221-P1a  Ami-Mir-221-P1a  Bta-Mir-221-P1a  Cfa-Mir-221-P1a  Cja-Mir-221-P1a1  Cja-Mir-221-P1a2  Cli-Mir-221-P1a  Cmi-Mir-221-P1a  Cpi-Mir-221-P1a  Cpo-Mir-221-P1a  Dno-Mir-221-P1a  Dre-Mir-221-P1a1  Eca-Mir-221-P1a  Ete-Mir-221-P1a  Gga-Mir-221-P1a  Gja-Mir-221-P1a  Gmo-Mir-221-P1a1  Gmo-Mir-221-P1a2  Hsa-Mir-221-P1a  Laf-Mir-221-P1a  Lch-Mir-221-P1a  Loc-Mir-221-P1a  Mal-Mir-221-P1a1  Mal-Mir-221-P1a2  Mdo-Mir-221-P1a  Mml-Mir-221-P1a  Mmr-Mir-221-P1a  Mmu-Mir-221-P1a  Mun-Mir-221-P1a  Neu-Mir-221-P1a  Oan-Mir-221-P1a  Ocu-Mir-221-P1a  Pab-Mir-221-P1a  Pbv-Mir-221-P1a  Rno-Mir-221-P1a  Sha-Mir-221-P1a  Spt-Mir-221-P1a  Sto-Mir-221-P1a  Tgu-Mir-221-P1a  Tni-Mir-221-P1a1  Xla-Mir-221-P1a3  Xla-Mir-221-P1a4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr2: 68930297-68930358 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-221-P1a)
Mir-221-P1a chr2: 68930297-68930358 [+] UCSC Ensembl
Mir-221-P2a chr2: 68930823-68930885 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUUUAAAAAAAGUUACCACUGGAGUUGUUCGCUCAGUAAUCAGUGUAGAUCCUGUAUAUCUGUCAGCAGCUACAUCUGGCUACUGGGUCUCUAACUCCAUUGCCUCUGUUCAGGGAUGAUC
Get precursor sequence
Structure
        10          20        30        40         50          
UGUUUAAAAAAAGUUAC--  C        UUC        AU   -|    AUCCUGUAUA 
                   CA UGGAGUUG   GCUCAGUA  CAG UGUAG          \
                   GU ACCUCAAU   UGGGUCAU  GUC ACAUC          U
CUAGUAGGGACUUGUCUCC  U        CUC        CG   U^    GACGACUGUC 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
An Br Em Em He Ve
Star sequence

Xtr-Mir-221-P1a_5p*

mirBase accessionNone
Sequence
0- CGCUCAGUAAUCAGUGUAGAUCC -23
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Mature sequence

Xtr-Mir-221-P1a_3p

mirBase accessionMIMAT0003633
Sequence
38- AGCUACAUCUGGCUACUGGGUCUC -62
Get sequence
Proposed targets TargetScanVert: xtr-miR-222