MirGeneDB ID | Sto-Mir-221-P1a |
Family name |
MIR-221 (all species) |
Seed |
GCUCAGU |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
|
Paralogues |
Sto-Mir-221-P1c
Sto-Mir-221-P2a
|
Orthologues |
Aca-Mir-221-P1a
Ami-Mir-221-P1a
Bta-Mir-221-P1a
Cfa-Mir-221-P1a
Cja-Mir-221-P1a1
Cja-Mir-221-P1a2
Cli-Mir-221-P1a
Cmi-Mir-221-P1a
Cpi-Mir-221-P1a
Cpo-Mir-221-P1a
Dno-Mir-221-P1a
Dre-Mir-221-P1a1
Eca-Mir-221-P1a
Ete-Mir-221-P1a
Gga-Mir-221-P1a
Gja-Mir-221-P1a
Gmo-Mir-221-P1a1
Gmo-Mir-221-P1a2
Hsa-Mir-221-P1a
Laf-Mir-221-P1a
Lch-Mir-221-P1a
Loc-Mir-221-P1a
Mal-Mir-221-P1a1
Mal-Mir-221-P1a2
Mdo-Mir-221-P1a
Mml-Mir-221-P1a
Mmr-Mir-221-P1a
Mmu-Mir-221-P1a
Mun-Mir-221-P1a
Neu-Mir-221-P1a
Oan-Mir-221-P1a
Ocu-Mir-221-P1a
Pab-Mir-221-P1a
Pbv-Mir-221-P1a
Rno-Mir-221-P1a
Sha-Mir-221-P1a
Spt-Mir-221-P1a
Tgu-Mir-221-P1a
Tni-Mir-221-P1a1
Xla-Mir-221-P1a3
Xla-Mir-221-P1a4
Xtr-Mir-221-P1a
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_003427355_STO_add) |
BFAA01004609.1: 227955-228015 [+]
|
Precursor (pre-Mir +30nt flank) |
AUUGUACUCCAUAUUUCAGUGCUCAUCGCUUGCUCAGUAGUCAGUGUAGAUUCUGUCUUCAUCCAGCAGCUACAUCUGGCUACUGGGUCUCUGAUGGUAUUGCACUCCUCCUCUUCUGCUG
Get precursor sequence
|
Structure | 10 20 30 40 50
AUUGUACUCCAUAUUUC---| U CUU - AUUCUGUCU
AGUGC CAUCG GCUCAGUAGUCAG UGUAG U
UUAUG GUAGU UGGGUCAUCGGUC ACAUC C
GUCGUCUUCUCCUCCUCACG^ - CUC U GACGACCUA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Sto-Mir-221-P1a_5p |
mirBase accession | None |
Sequence |
0- UGCUCAGUAGUCAGUGUAGAUUC -23
Get sequence
|
Co-mature sequence |
Sto-Mir-221-P1a_3p |
mirBase accession | None |
Sequence |
37- AGCUACAUCUGGCUACUGGGUCUC -61
Get sequence
|