Mir-221-P1a1

MirGeneDB ID

Mal-Mir-221-P1a1

Family name

MIR-221 (all species)

Seed

GCUACAU

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-221-P1a2 Mal-Mir-221-P2a1 Mal-Mir-221-P2a2

Orthologues

Aca-Mir-221-P1a Ami-Mir-221-P1a Bta-Mir-221-P1a Cfa-Mir-221-P1a Cja-Mir-221-P1a1 Cli-Mir-221-P1a Cmi-Mir-221-P1a Cpi-Mir-221-P1a Cpo-Mir-221-P1a Dno-Mir-221-P1a Dre-Mir-221-P1a1 Eca-Mir-221-P1a Ete-Mir-221-P1a Gga-Mir-221-P1a Gja-Mir-221-P1a Gmo-Mir-221-P1a1 Hsa-Mir-221-P1a Laf-Mir-221-P1a Lch-Mir-221-P1a Loc-Mir-221-P1a Mdo-Mir-221-P1a Mml-Mir-221-P1a Mmr-Mir-221-P1a Mmu-Mir-221-P1a Mun-Mir-221-P1a Neu-Mir-221-P1a Oan-Mir-221-P1a Ocu-Mir-221-P1a Pab-Mir-221-P1a Pbv-Mir-221-P1a Rno-Mir-221-P1a Sha-Mir-221-P1a Spt-Mir-221-P1a Sto-Mir-221-P1a Tgu-Mir-221-P1a Tni-Mir-221-P1a1 Xtr-Mir-221-P1a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV885120.1: 273598-273659 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCGGUUCACAGUUCUCUGGCUGCUGUCAGUUGCUCAGUAGGCAGUGUAGAUCCUGUGUAGCAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUGACGGCUCUGCCUACUUCCUGGUCAACCA

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Structure

        10        20          30        40         50          
GCGGUUCACAGUUCUCUG  U--        UU         G   -|    AUCCUGUGUA 
                  GC   GCUGUCAG  GCUCAGUAG CAG UGUAG          \
                  CG   CGGCAGUC  UGGGUCAUC GUC ACAUC          G
ACCAACUGGUCCUUCAUC  UCU        UC         G   U^    GACGACUAAC 
120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Fe	Fe	In	Ma	Ma

Star sequence

Mal-Mir-221-P1a1_5p*

mirBase accession

None

Sequence

0- UGCUCAGUAGGCAGUGUAGAUCC -23

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Mature sequence

Mal-Mir-221-P1a1_3p

mirBase accession

None

Sequence

38- AGCUACAUCUGGCUACUGGGUCUC -62

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