MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-221-P1a

Family name MIR-221 (all species)
Seed GCUACAU
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-221-P1c  Gja-Mir-221-P2a 
Orthologues Aca-Mir-221-P1a  Ami-Mir-221-P1a  Bta-Mir-221-P1a  Cfa-Mir-221-P1a  Cja-Mir-221-P1a1  Cja-Mir-221-P1a2  Cli-Mir-221-P1a  Cmi-Mir-221-P1a  Cpi-Mir-221-P1a  Cpo-Mir-221-P1a  Dno-Mir-221-P1a  Dre-Mir-221-P1a1  Eca-Mir-221-P1a  Ete-Mir-221-P1a  Gga-Mir-221-P1a  Gmo-Mir-221-P1a1  Gmo-Mir-221-P1a2  Hsa-Mir-221-P1a  Laf-Mir-221-P1a  Lch-Mir-221-P1a  Loc-Mir-221-P1a  Mal-Mir-221-P1a1  Mal-Mir-221-P1a2  Mdo-Mir-221-P1a  Mml-Mir-221-P1a  Mmr-Mir-221-P1a  Mmu-Mir-221-P1a  Mun-Mir-221-P1a  Neu-Mir-221-P1a  Oan-Mir-221-P1a  Ocu-Mir-221-P1a  Pab-Mir-221-P1a  Pbv-Mir-221-P1a  Rno-Mir-221-P1a  Sha-Mir-221-P1a  Spt-Mir-221-P1a  Sto-Mir-221-P1a  Tgu-Mir-221-P1a  Tni-Mir-221-P1a1  Xla-Mir-221-P1a3  Xla-Mir-221-P1a4  Xtr-Mir-221-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015165234.1: 1525899-1525961 [+]
Precursor
(pre-Mir +30nt flank)
UUGGUCAAGAUGUUUUAGUUGCUCGUCAUUCGCUCAGUAGUCAGUGUAGAUUCUGUUUUCUCAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUGAGGACAUCUUGUAACAUCUCUUCAAUGU
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Structure
        10           20        30        40         50        60
UUGGUCAAGAUGUUUUA---|U  C  G   UUC             -     AUUCUGUUUU 
                    G UG UC UCA   GCUCAGUAGUCAG UGUAG          C
                    C AC AG AGU   UGGGUCAUCGGUC ACAUC          U
UGUAACUUCUCUACAAUGUU^U  -  G   CUC             U     GACGACUAAC 
 120       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Gja-Mir-221-P1a_5p*
mirBase accessionNone
Sequence 
0- CGCUCAGUAGUCAGUGUAGAUUC -23
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Mature sequence

Gja-Mir-221-P1a_3p
mirBase accessionNone
Sequence 
39- AGCUACAUCUGGCUACUGGGUCUC -63
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