MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-221-P2a

Family name MIR-221 (all species)
Seed GCUACAU
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-221-P1a  Gja-Mir-221-P1c 
Orthologues Aca-Mir-221-P2a  Ami-Mir-221-P2a  Bta-Mir-221-P2a  Cfa-Mir-221-P2a  Cja-Mir-221-P2a  Cli-Mir-221-P2a  Cmi-Mir-221-P2a  Cpi-Mir-221-P2a  Cpo-Mir-221-P2a  Dno-Mir-221-P2a  Dre-Mir-221-P2a1  Dre-Mir-221-P2a2  Eca-Mir-221-P2a  Ete-Mir-221-P2a  Gga-Mir-221-P2a  Gmo-Mir-221-P2a1  Gmo-Mir-221-P2a2  Hsa-Mir-221-P2a  Laf-Mir-221-P2a  Lch-Mir-221-P2a  Loc-Mir-221-P2a  Mal-Mir-221-P2a1  Mal-Mir-221-P2a2  Mdo-Mir-221-P2a  Mml-Mir-221-P2a  Mmr-Mir-221-P2a  Mmu-Mir-221-P2a  Mun-Mir-221-P2a  Neu-Mir-221-P2a  Oan-Mir-221-P2a  Ocu-Mir-221-P2a  Pab-Mir-221-P2a  Pbv-Mir-221-P2a  Rno-Mir-221-P2a  Sha-Mir-221-P2a  Spt-Mir-221-P2a  Sto-Mir-221-P2a  Tgu-Mir-221-P2a  Tni-Mir-221-P2a1  Xla-Mir-221-P2a3  Xla-Mir-221-P2a4  Xtr-Mir-221-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015165234.1: 1526266-1526328 [+]
Precursor
(pre-Mir +30nt flank)
GAAGAAAUAUGAUCUGGCCUUGGGGCAUGAACCUGGCAUACAAUGUAGAAUUCUGUGUUUGUUAAGCAACAGCUACAUUGUCUGCUGGGUUUCAGGCUGCCUGGAAAUACAAAGAAAAUUUCU
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Structure
        10          20          30        40        50        60
GAAGAAAUAUGAUCUGG--  UU  -   A  -|   UG   U         AAUUCUGUGUU 
                   CC  GG GGC UG AACC  GCA ACAAUGUAG           U
                   GG  CC UCG AC UUGG  CGU UGUUACAUC           G
UCUUUAAAAGAAACAUAAA  U-  G   G  U^   GU   C         GACAACGAAUU 
 120       110        100        90        80        70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
To
Star sequence

Gja-Mir-221-P2a_5p*
mirBase accessionNone
Sequence 
0- ACCUGGCAUACAAUGUAGAAUUC -23
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Mature sequence

Gja-Mir-221-P2a_3p
mirBase accessionNone
Sequence 
40- AGCUACAUUGUCUGCUGGGUUUC -63
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