MirGeneDB 2.1

MirGeneDB ID

Gga-Mir-221-P2a

Family name MIR-221 (all species)
Seed GCUACAU
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-221
Paralogues Gga-Mir-221-P1a  Gga-Mir-221-P1b 
Orthologues Aca-Mir-221-P2a  Ami-Mir-221-P2a  Bta-Mir-221-P2a  Cfa-Mir-221-P2a  Cli-Mir-221-P2a  Cmi-Mir-221-P2a  Cpi-Mir-221-P2a  Cpo-Mir-221-P2a  Dno-Mir-221-P2a  Dre-Mir-221-P2a1  Dre-Mir-221-P2a2  Ete-Mir-221-P2a  Gja-Mir-221-P2a  Gmo-Mir-221-P2a1  Gmo-Mir-221-P2a2  Hsa-Mir-221-P2a  Lch-Mir-221-P2a  Loc-Mir-221-P2a  Mal-Mir-221-P2a1  Mal-Mir-221-P2a2  Mdo-Mir-221-P2a  Mml-Mir-221-P2a  Mmu-Mir-221-P2a  Mun-Mir-221-P2a  Oan-Mir-221-P2a  Ocu-Mir-221-P2a  Pbv-Mir-221-P2a  Rno-Mir-221-P2a  Sha-Mir-221-P2a  Spt-Mir-221-P2a  Sto-Mir-221-P2a  Tgu-Mir-221-P2a  Tni-Mir-221-P2a1  Xla-Mir-221-P2a3  Xla-Mir-221-P2a4  Xtr-Mir-221-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)
1: 111967061-111967123 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-221-P2a)
Mir-221-P1a 1: 111966551-111966613 [+] UCSC Ensembl
Mir-221-P2a 1: 111967061-111967123 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGGGAAGACUGUCCAGGUUUGGGGCAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUGUUAAGCAACAGCUACAUUGUCUGCUGGGUUUCCAGCUGCCUGGAAAUACAAAGUGGAGGGUU
Get precursor sequence
Structure
        10        20            30        40        50        60  
GUGGGAAGACUGUCCAGGU  G     U----|    UG   U         AUUU    GUUUG 
                   UU GGGCA     GAACC  GCA ACAAUGUAG    CUGU     U
                   AG UCCGU     UUUGG  CGU UGUUACAUC    GACA     U
UUGGGAGGUGAAACAUAA-  G     CGACC^    GU   C         ----    ACGAA 
 120       110        100        90        80            70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Ch He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-221-P2a_5p*

mirBase accessionMIMAT0026494
Sequence
0- ACCUGGCAUACAAUGUAGAUUUCUGU -26
Get sequence
Proposed targets TargetScanVert: gga-miR-221-5p
miRDB: MIMAT0026494
Mature sequence

Gga-Mir-221-P2a_3p

mirBase accessionMIMAT0001108
Sequence
40- AGCUACAUUGUCUGCUGGGUUUC -63
Get sequence
Proposed targets TargetScanVert: gga-miR-221-3p
miRDB: MIMAT0001108