MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-221-P2a

Family name MIR-221 (all species)
Seed GCUACAU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-221-P1a1  Cja-Mir-221-P1a2 
Orthologues Aca-Mir-221-P2a  Ami-Mir-221-P2a  Bta-Mir-221-P2a  Cfa-Mir-221-P2a  Cli-Mir-221-P2a  Cmi-Mir-221-P2a  Cpi-Mir-221-P2a  Cpo-Mir-221-P2a  Dno-Mir-221-P2a  Dre-Mir-221-P2a1  Dre-Mir-221-P2a2  Eca-Mir-221-P2a  Ete-Mir-221-P2a  Gga-Mir-221-P2a  Gja-Mir-221-P2a  Gmo-Mir-221-P2a1  Gmo-Mir-221-P2a2  Hsa-Mir-221-P2a  Laf-Mir-221-P2a  Lch-Mir-221-P2a  Loc-Mir-221-P2a  Mal-Mir-221-P2a1  Mal-Mir-221-P2a2  Mdo-Mir-221-P2a  Mml-Mir-221-P2a  Mmr-Mir-221-P2a  Mmu-Mir-221-P2a  Mun-Mir-221-P2a  Neu-Mir-221-P2a  Oan-Mir-221-P2a  Ocu-Mir-221-P2a  Pab-Mir-221-P2a  Pbv-Mir-221-P2a  Rno-Mir-221-P2a  Sha-Mir-221-P2a  Spt-Mir-221-P2a  Sto-Mir-221-P2a  Tgu-Mir-221-P2a  Tni-Mir-221-P2a1  Xla-Mir-221-P2a3  Xla-Mir-221-P2a4  Xtr-Mir-221-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021937.1: 45129967-45130029 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCGAGCUGAGCAUCCAGGUUUGGGGCAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUCAUUAGGCAACAGCUACAUUGUCUGCUGGGUUUCAGGCUACCUGGAAACAUGUUCUCCGUUGGC
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Structure
        10        20           30        40        50        60  
GCGAGCUGAGCAUCCAGG  UG  --  A  -|   UG   U         AUUU    GUUCA 
                  UU  GG  GC UG AACC  GCA ACAAUGUAG    CUGU     U
                  AG  CC  CG AC UUGG  CGU UGUUACAUC    GACA     U
CGGUUGCCUCUUGUACAA  GU  AU  G  U^   GU   C         ----    ACGGA 
 120       110       100        90        80            70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
To
Star sequence

Cja-Mir-221-P2a_5p*
mirBase accessionNone
Sequence 
0- ACCUGGCAUACAAUGUAGAUUUCUGU -26
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Mature sequence

Cja-Mir-221-P2a_3p
mirBase accessionNone
Sequence 
40- AGCUACAUUGUCUGCUGGGUUUC -63
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