MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-221-P2a2

Family name MIR-221 (all species)
Seed GCUACAU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-221-2
Paralogues Gmo-Mir-221-P1a1  Gmo-Mir-221-P1a2  Gmo-Mir-221-P2a1 
Orthologues Aca-Mir-221-P2a  Ami-Mir-221-P2a  Bta-Mir-221-P2a  Cfa-Mir-221-P2a  Cja-Mir-221-P2a  Cli-Mir-221-P2a  Cmi-Mir-221-P2a  Cpi-Mir-221-P2a  Cpo-Mir-221-P2a  Dno-Mir-221-P2a  Dre-Mir-221-P2a2  Eca-Mir-221-P2a  Ete-Mir-221-P2a  Gga-Mir-221-P2a  Gja-Mir-221-P2a  Hsa-Mir-221-P2a  Laf-Mir-221-P2a  Lch-Mir-221-P2a  Loc-Mir-221-P2a  Mal-Mir-221-P2a2  Mdo-Mir-221-P2a  Mml-Mir-221-P2a  Mmr-Mir-221-P2a  Mmu-Mir-221-P2a  Mun-Mir-221-P2a  Neu-Mir-221-P2a  Oan-Mir-221-P2a  Ocu-Mir-221-P2a  Pab-Mir-221-P2a  Pbv-Mir-221-P2a  Rno-Mir-221-P2a  Sha-Mir-221-P2a  Spt-Mir-221-P2a  Sto-Mir-221-P2a  Tgu-Mir-221-P2a  Xtr-Mir-221-P2a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 contig307202: 158-220 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGUACUGGUUGUACUGGGUGUUAUUCUGGACCCGGCAUACAUUGUAGGAUUCUGUGUGGGUGAAGCGACAGCUACAUUGUCUGCUGGGUUUCAGACGGCACCCCCAUGACCGCAUGACAUUU
Get precursor sequence
Structure
        10           20        30         40        50        60  
UUGUACUGGUUGUACUG---|     AU      -       U   U     GAUU    GUGGG 
                    GGUGUU  UCUGGA CCCGGCA ACA UGUAG    CUGU     U
                    CCACGG  AGACUU GGGUCGU UGU ACAUC    GACA     G
UUUACAGUACGCCAGUACCC^     C-      U       C   U     ----    GCGAA 
 120       110       100         90        80            70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-221-P2a2_5p*
mirBase accessionMIMAT0044021
Sequence 
0- ACCCGGCAUACAUUGUAGGAUUCUGU -26
Get sequence
Mature sequence

Gmo-Mir-221-P2a2_3p
mirBase accessionMIMAT0044022
Sequence 
40- AGCUACAUUGUCUGCUGGGUUUC -63
Get sequence