MirGeneDB 3.0

MirGeneDB ID

Oan-Mir-221-P2a

Family name MIR-221 (all species)
Seed CCUGGCA
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-221
Paralogues Oan-Mir-221-P1a  Oan-Mir-221-P1c 
Orthologues Aca-Mir-221-P2a  Ami-Mir-221-P2a  Bta-Mir-221-P2a  Cfa-Mir-221-P2a  Cja-Mir-221-P2a  Cli-Mir-221-P2a  Cmi-Mir-221-P2a  Cpi-Mir-221-P2a  Cpo-Mir-221-P2a  Dno-Mir-221-P2a  Dre-Mir-221-P2a1  Dre-Mir-221-P2a2  Eca-Mir-221-P2a  Ete-Mir-221-P2a  Gga-Mir-221-P2a  Gja-Mir-221-P2a  Gmo-Mir-221-P2a1  Gmo-Mir-221-P2a2  Hsa-Mir-221-P2a  Laf-Mir-221-P2a  Lch-Mir-221-P2a  Loc-Mir-221-P2a  Mal-Mir-221-P2a1  Mal-Mir-221-P2a2  Mdo-Mir-221-P2a  Mml-Mir-221-P2a  Mmr-Mir-221-P2a  Mmu-Mir-221-P2a  Mun-Mir-221-P2a  Neu-Mir-221-P2a  Ocu-Mir-221-P2a  Pab-Mir-221-P2a  Pbv-Mir-221-P2a  Rno-Mir-221-P2a  Sha-Mir-221-P2a  Spt-Mir-221-P2a  Sto-Mir-221-P2a  Tgu-Mir-221-P2a  Tni-Mir-221-P2a1  Xla-Mir-221-P2a3  Xla-Mir-221-P2a4  Xtr-Mir-221-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041745.1: 8660201-8660263 [+]
Clustered miRNAs
(< 50kb from Mir-221-P2a)
Mir-221-P1a NC_041745.1: 8659576-8659637 [+]
Mir-221-P2a NC_041745.1: 8660201-8660263 [+]
Precursor
(pre-Mir +30nt flank)
GUAGGACGACCAUUCAGGUUUGAGGCAUGAACCUGGCAUACAAUGUAGAAUUCUGUAUUUGUUAAGCAACAGCUACAUUGUCUGCUGGGUUUCAAGCUACCUGGAAAUGUACACUCAGUGACU
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Structure
        10        20           30        40        50        60
GUAGGACGACCAUUCAGGUUUGA--   A  -|   UG   U         AAUUCUGUAUU 
                         GGC UG AACC  GCA ACAAUGUAG           U
                         UCG AC UUGG  CGU UGUUACAUC           G
UCAGUGACUCACAUGUAAAGGUCCA   A  U^   GU   C         GACAACGAAUU 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Oan-Mir-221-P2a_5p

mirBase accessionMIMAT0007134
Sequence
0- ACCUGGCAUACAAUGUAGAAUU -22
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Star sequence

Oan-Mir-221-P2a_3p*

mirBase accessionMIMAT0007135
Sequence
40- AGCUACAUUGUCUGCUGGGUUUC -63
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